Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01881 ATGGCAATGAGCAACAACATCATAGGATTCATAAACTTACTTGCTGTAATAATTTCAATCCCAATCATTGGTGCTGGAATCTGGCTAACAAACGAACCAGCAGACACATGTGTCAAATTTCTTCAATGGCCAGTAATAATCCTAGGTGTTCTTCTCTTAATTGTCTCTCTAGCTGGTCTCATAGGTTCTTTTTGGAGAATCTCATGTCTTCTCATATTCTACCTTGTTGCTATGCTTGTTCTCATTATACTTCTTGTTTGTTTGGTTGTTTTTGTTTATATGGTCACTGTTCGTGGTCATGGTATGATTGAACCTAATAGAGCTTATTTGGAATACCGTTTAGATGATTTTTCTGGATTTTTGAAAAGAAGAGTTAGAAGTTCTTTTAAATGGGATGCTATTAGAAGTTGTCTTACTGAAACTAATATGTGTGCTGAGTTGAATCAGAATTTCAGAATGGCTCAAGATTTCTTTAATGCACATCTTACACCAATGCAGTCAGGGTGTTGCAAACCACCAACACAATGTGCATACACATTTGTGAACCCAACTTATTGGATTAGTCCAATAAACAATGCAGCAGATATGGATTGTCTTCAATGGAGCAATGACCAAACAACACTTTGCTACAATTGTGACTCATGCAAAGCTGGTTTGTTGGCAAATCTTAGAAAGGAATGGAAAAGAGCTAATGTGATTTTGATAATCACTGTTATTGTTTTAATTGTGGTTTATTTGATTGGTTGTTTTGCTTTTAGGAATGCCAAAACTGAAGATCTCTTTCGCAAATACAAACAAGGCTATACTTAA 810 0.3543 MAMSNNIIGFINLLAVIISIPIIGAGIWLTNEPADTCVKFLQWPVIILGVLLLIVSLAGLIGSFWRISCLLIFYLVAMLVLIILLVCLVVFVYMVTVRGHGMIEPNRAYLEYRLDDFSGFLKRRVRSSFKWDAIRSCLTETNMCAELNQNFRMAQDFFNAHLTPMQSGCCKPPTQCAYTFVNPTYWISPINNAADMDCLQWSNDQTTLCYNCDSCKAGLLANLRKEWKRANVILIITVIVLIVVYLIGCFAFRNAKTEDLFRKYKQGYT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01881 269 ProSitePatterns Transmembrane 4 family signature. 49 71 IPR018503 GO:0016020
Trre9g01881 269 Pfam Tetraspanin family 6 250 IPR018499 GO:0016020
Trre9g01881 269 PRINTS Transmembrane four family signature 6 29 - -
Trre9g01881 269 PRINTS Transmembrane four family signature 65 93 - -
Trre9g01881 269 PRINTS Transmembrane four family signature 38 64 - -
Trre9g01881 269 PANTHER TETRASPANIN-8-RELATED 1 258 IPR044991 GO:0009734|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01881 Trre-Chr9 18033565 18035166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01881 1 269 Miscellaneous Gene Families AT5G46700 67.658 1.25e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01881 - - gmx:100795775 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01881 9 18033565 18035166 Trre9g01881 9 18033565 18035166 ECH
Trre9g01881 9 18033565 18035166 Trre15g01988 15 16084613 16086456 PCT