Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01873 ATGGCCAAAAAGAAACAGAAAGAGCCAAAACAAACCCCTGAAAACGACACCGTTTCAGCTCCTTCCAGCATTTTCGATACGCTTTTTGCCAACGCGCCGGAACAAATCACCGCCACCGCCGCTTCTCTATTTTCCGATGAAAACCCCTTTAAGAGAAAGGCTTCACAACCAGCTCCCATTTCCGACGTATCCGAGAAAAGCATCGTTGATGAAAAGAAGAGGAAGAAGAAGAAAGAGGAAAGTTTCGTGATTGATTCAAATTCTGCAATTGAAGTTTCAGAGAAGAAGAAAAAGAAGAAAAGTGGTTCAGACGAAGGGGAAGAGAAGGAAAAAGAGCTTAATTTGGATGTAGAAACGATTGGGAAGAAGAAGAAGAGGAAAAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGAATTGTTGAAGGAGGAGATAAAGATGAAAAAGTTGGGAATAAGAGAAAATTGCGCGATAATCCGGCAGATATGTTGGTTTCAAAAGAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTTAAGGTGAAAAAGAAGACTTTGTTGAAAGAGTTTAAGCAATTTGGTGAAGTTGAATCTGTTAGGATTCGTTCTGTACCTTTACAAGATACCAAAAAGCCTAGAAAGGGAGCTATCCTTGCGAAGAAGATCAATGAATCGGCTGAAAGTGTCAATGCTTACATTGTTTTCAAAACTGAGGAGTCTGCTCAGGCTTCTTTGGCCCACAACATGACTGTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCTTGCCCACCCCGCAAGAAACTCAAAGGGGATAGCTCTTCGCTTTATGATAACAAGAGAACTGTTTTTGTGGGCAATCTCCCGTTTGATGTGAAGGATGAAGAACTTTATCAGCTATTTAGTGGTATACCCAATCTAGAATCAAGTGTAGAAGCTGTTAGAGTTGTCCGAGATCCTCATCTTAATGTTGGAAAGGGAATTGCGTATGTGCTATTTAAATCAAGGGAAGCTACCATTTCTGTTGTTAAGAAACGGTCCTTGAAGCTGCGAGATCGAGAATTGAGACTCACTCATGCCAAAGCAGATGCTACTGCTACCCCATCTAAAAGGCCGTACTCTCCAGCGGCACGACCTAGTCATGGCAAACCAGGTGCTACACCATCTAAAAGGCCATACTCTCCAGCAGCACAAGCTCATCGTACCCCTGCAAAGAAATTTTCAGGGGATTCAAGGTCTCCTTCAAGCATTAAAAACAGGTCAAACAGCAAAGCTACTACATCTTATCAGGGTCTGCGTGCATCCAAAACTGATGTCCATAAGAAAAGTCACGGTGTAGAAAAACCAAAAGAGCGCACTAAGAAAAGACCAACAGTAGCTGCCAGAAAGGCTAAAGCAAACATGCAGAAGGAGGGTGGTACACCAAAGGGTGCTACACCAAAACAAGCAGGGTTTAAACGCAAGTTTGATAGTCGTACTCCTGATAGCTCCCGACGAGTTAACAAAGCCCAAAAGAAGAGGTAG 1554 0.4266 MAKKKQKEPKQTPENDTVSAPSSIFDTLFANAPEQITATAASLFSDENPFKRKASQPAPISDVSEKSIVDEKKRKKKKEESFVIDSNSAIEVSEKKKKKKSGSDEGEEKEKELNLDVETIGKKKKRKRDEVEKEWEEKKYGIVEGGDKDEKVGNKRKLRDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKQFGEVESVRIRSVPLQDTKKPRKGAILAKKINESAESVNAYIVFKTEESAQASLAHNMTVVEGNHIRVDRACPPRKKLKGDSSSLYDNKRTVFVGNLPFDVKDEELYQLFSGIPNLESSVEAVRVVRDPHLNVGKGIAYVLFKSREATISVVKKRSLKLRDRELRLTHAKADATATPSKRPYSPAARPSHGKPGATPSKRPYSPAAQAHRTPAKKFSGDSRSPSSIKNRSNSKATTSYQGLRASKTDVHKKSHGVEKPKERTKKRPTVAARKAKANMQKEGGTPKGATPKQAGFKRKFDSRTPDSSRRVNKAQKKR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01873 517 MobiDBLite consensus disorder prediction 369 517 - -
Trre9g01873 517 MobiDBLite consensus disorder prediction 493 510 - -
Trre9g01873 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 372 IPR000504 GO:0003723
Trre9g01873 517 Gene3D - 176 279 IPR012677 -
Trre9g01873 517 SUPERFAMILY RNA-binding domain, RBD 173 280 IPR035979 GO:0003676
Trre9g01873 517 CDD RRM1_RBM34 180 270 - -
Trre9g01873 517 MobiDBLite consensus disorder prediction 1 22 - -
Trre9g01873 517 SMART rrm1_1 292 368 IPR000504 GO:0003723
Trre9g01873 517 SMART rrm1_1 181 270 IPR000504 GO:0003723
Trre9g01873 517 CDD RRM2_RBM34 292 368 IPR034221 -
Trre9g01873 517 MobiDBLite consensus disorder prediction 65 135 - -
Trre9g01873 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 274 IPR000504 GO:0003723
Trre9g01873 517 PANTHER OS02G0815200 PROTEIN 52 368 - -
Trre9g01873 517 SUPERFAMILY RNA-binding domain, RBD 286 394 IPR035979 GO:0003676
Trre9g01873 517 MobiDBLite consensus disorder prediction 445 464 - -
Trre9g01873 517 MobiDBLite consensus disorder prediction 40 135 - -
Trre9g01873 517 MobiDBLite consensus disorder prediction 418 444 - -
Trre9g01873 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 365 IPR000504 GO:0003723
Trre9g01873 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 224 IPR000504 GO:0003723
Trre9g01873 517 Gene3D - 280 380 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01873 Trre-Chr9 17906890 17910771 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01873 K14837 - gmx:100784494 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01873 9 17906890 17910771 Trre9g01873 9 17906890 17910771 ECH