Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01853 ATGGTGGTGAAATGCTTACTCCGTAACAGACTTCACTTCCAACAACAACAACAACAATCACGTTTCTTCAGGTTCTATTCTTCATCTTCTTCCACATTATTGATGTTAGAACATGAAACTTCAAATTTCAATGACCCACTTCCCAAAACCCCATCAAAATTGTCTCTTTTGGTTGTTAAAGTCTTAAAGTCTTTAAATTGGAGGACTGCAAGGGAAATTAAGTTCAAGGGTTGGGTTCAAACTCATGGTTTTTCTCCTTCAATCAATTCCTTTAGAATAATGACTCATACTTTTGCTTTAGCTGGTATGCGTTTGGAAGTGTTTGCATTGCTTAGAGATATTGTTGGATACTATAAAGAAGAAAATCGCGACTCGTTTGAATTGTTTTCGGCTTTGCTTGATTCGCCACACCATGTGGAAAGGTCTGTTGTTGTGTTTGATATGCTTGTGAAAGTTTTTGCTTCGAATGGTATGCTTGAACATGCTTATTATGTGTTTGTTAGTGCTAAGGATGTTGGGATTGAATTGAATATAATGTGTTGCAATTTCTTGTTGAAATGTTTGGTAGAAGCAAATAGAGTGGATGATGTGAGATGTTTGTTTGAGGATTTGAAAAACTTTGGTCCTACGCCGAATATCCACACATATACTATCATGATGAACTTTTATTGCAGAGATGTTGGGTGCAGTGTTGATATTAGACGGGCTTCTGAGATTTTAGGGAAGATATATAGGACTGGGGAAACCCCAAATGTTGTCACGTATAGTACTTATATTAAGGGACTTTGTAAAGTTGGTTCCTTTGAGGTTGCTTGGAAGTTAATTTGTAACTTGCACCGTAAAAACCAGCCTCTCAATAGCCATTGTTTTAATGCTATCATATATGGACTTTGTCAAAGAGGTTCTGTAGATGAAGCTTCAGAAGTTTTGGAAGAAATGAAAAACTTTGGAGTATTGCCTGATTTTTATAGTTATAGCATTTTAATTGATGGATTTTGTAGGGAAGGTGGTATGGATTCAGCTGTCAAGATTTTGAAGGAGATGAGTAGCAATAATATTGCTCCTTCTGCTTTTAGTTGTTGCAGTCTAATTAGGGAATACTACAAATCGAGACAATTCGCTAAAGCATTGGAAGTTTTTGTTATCATGAAAAAACATGGTCTATGGCCAGATACAATCGCTTGCAACCATATTCTTAGTATTTACTGCAGGAAAAGCAACTTCAATGAAGCATTGGTTTTTTTGGAGGAATTCCAAGAACACGGAGTTAACCTCAACCCACATTCATATAATGAATTCATCCACAGGCTTTGCAGAGAAAGTTTTCCAAAAAAGGCACTGCAGCTTCTGCCGATAATGCTTAAAAGGAATGTACTTCCGGGCGTTGTTAATTATAGTACTCTTATATCTGCCATTGCCAAACAGTCAAATCCTAAAAAAGCTGTGATGTTATTCACAAGAATGACAAAAGTAGGAATAACTTTCAACGTCAAAACGTATACAATTCTTATTGACCTATGTACCCGTAATTGCGGAACGCTTAGATCATATTACTTATTTGAGGAAATGCAAGAAAGGGGTGTATATCCAGATCAGATCGCGTATACAACTCTAATCACTGCCTTTTGTAATACCGGAGAAATGGTTAAGGCGCGGGCATTATTTGATGAAATGTTGCGGGAAGGCTGTTTACCAAATGTAATTACTTATACTTGTATGATTAGTGGATATTGGAAGTTAAACATGATGGATCAGGTTAAGAAGTTGTATAATGAAATGAAAGAAAAGGGTGTATATCTAGATCAGATCGCATATACAACTCTAATAGCTGCCTTCTGTAGTACTGGAGAATTGATTTTGGCGCGGGCATTTTTTGATGAAATGTTACGGGAAGGCTATTCGCCAAATGTAATTCTTTATACTTGTATGATTAATGGATATTGGAAGTTAAACATGATAGACCGGGCTAAGAAGTTGTATGACGAAATGAAAGAAAATGGTGTGTATCCAGATCGGATCGCATATACAACTCTAATAGCTGCCTTTTGTAATACTGGAGAAATGATTATGGCGCATACATTATTTGATGAAATGTTGCGGGAAGGCTATTCACCAAATGCAAGTACTTATGCTCCTCTGTCAAGGCTTCCATTATGTCCAGCTGAAATTTGTATAGTTGAAGGGGATTCAGTTGGAGGAAGTGCTAAGCAAGGTCGTGACAAGCGCTTCCAGGGAGAATATTTTTAA 2247 0.3685 MVVKCLLRNRLHFQQQQQQSRFFRFYSSSSSTLLMLEHETSNFNDPLPKTPSKLSLLVVKVLKSLNWRTAREIKFKGWVQTHGFSPSINSFRIMTHTFALAGMRLEVFALLRDIVGYYKEENRDSFELFSALLDSPHHVERSVVVFDMLVKVFASNGMLEHAYYVFVSAKDVGIELNIMCCNFLLKCLVEANRVDDVRCLFEDLKNFGPTPNIHTYTIMMNFYCRDVGCSVDIRRASEILGKIYRTGETPNVVTYSTYIKGLCKVGSFEVAWKLICNLHRKNQPLNSHCFNAIIYGLCQRGSVDEASEVLEEMKNFGVLPDFYSYSILIDGFCREGGMDSAVKILKEMSSNNIAPSAFSCCSLIREYYKSRQFAKALEVFVIMKKHGLWPDTIACNHILSIYCRKSNFNEALVFLEEFQEHGVNLNPHSYNEFIHRLCRESFPKKALQLLPIMLKRNVLPGVVNYSTLISAIAKQSNPKKAVMLFTRMTKVGITFNVKTYTILIDLCTRNCGTLRSYYLFEEMQERGVYPDQIAYTTLITAFCNTGEMVKARALFDEMLREGCLPNVITYTCMISGYWKLNMMDQVKKLYNEMKEKGVYLDQIAYTTLIAAFCSTGELILARAFFDEMLREGYSPNVILYTCMINGYWKLNMIDRAKKLYDEMKENGVYPDRIAYTTLIAAFCNTGEMIMAHTLFDEMLREGYSPNASTYAPLSRLPLCPAEICIVEGDSVGGSAKQGRDKRFQGEYF 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01853 748 NCBIfam pentatricopeptide repeat 499 531 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 674 707 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 639 671 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 465 496 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 534 567 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 289 321 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 604 637 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 180 212 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 568 601 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 323 356 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 253 282 IPR002885 -
Trre9g01853 748 NCBIfam pentatricopeptide repeat 394 426 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Trre9g01853 748 Pfam PPR repeat 249 274 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Trre9g01853 748 Pfam PPR repeat 359 388 IPR002885 -
Trre9g01853 748 Pfam PPR repeat 604 632 IPR002885 -
Trre9g01853 748 Gene3D Tetratricopeptide repeat domain 230 381 IPR011990 GO:0005515
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Trre9g01853 748 Gene3D Tetratricopeptide repeat domain 119 229 IPR011990 GO:0005515
Trre9g01853 748 Gene3D Tetratricopeptide repeat domain 397 512 IPR011990 GO:0005515
Trre9g01853 748 Gene3D Tetratricopeptide repeat domain 617 716 IPR011990 GO:0005515
Trre9g01853 748 Gene3D Tetratricopeptide repeat domain 513 616 IPR011990 GO:0005515
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Trre9g01853 748 Pfam PPR repeat family 177 225 IPR002885 -
Trre9g01853 748 Pfam PPR repeat family 530 577 IPR002885 -
Trre9g01853 748 Pfam PPR repeat family 286 334 IPR002885 -
Trre9g01853 748 Pfam PPR repeat family 390 439 IPR002885 -
Trre9g01853 748 Pfam PPR repeat family 460 507 IPR002885 -
Trre9g01853 748 Pfam PPR repeat family 635 684 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Trre9g01853 748 PANTHER OS03G0856100 PROTEIN 643 711 - -
Trre9g01853 748 SUPERFAMILY HCP-like 320 492 - -
Trre9g01853 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01853 Trre-Chr9 17672314 17675981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01853 205 713 Glycosyltransferase AT1G05670 25.926 3.67e-55 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01853 - - cam:101492947 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01853 9 17672314 17675981 Trre9g01853 9 17672314 17675981 ECH