Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01735 ATGGCTGCTCTTCAATACCTTGAATCTCTTCGAAGTTCACATCCTGAACTCGGCGATTGGTACAATTCTCTTGCGGATCTGTACCAGAAGAAGCTATGGCATCAGCTCACTCTCAAGCTCGAACAGTTCGTCGCTCTTGCCGTTTTTCAGGCTGGTGATGCTCTGATACAATTATATAACAATTTCATCACAGATTTCGAGACTAAAATCAACCTTCTTAAGCTTGCTCATTTTGCTGTGATGGTTTCCCGACAGTATTCTGAGAAAGAAGCTGCCATCGGTTATCTTGAAGGCATCATTGAGAAACTACAAGCCACTAGAGAGCAGCGTATAGAAGAGCCTATCCTATACATTAAGATGCAAATCGCCTTATTTAAGCTTGAACAAGGTGACCAAAAGGAATGCAAGAATCTTCTTGAAAATGGAAAGAGTACGCTTGACAGCATGACAGATATTGATCCAACTGTCTATGCGAGCTATTACTGGGTATCTTCTCAATATCACAAATCCCGTCAGGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACAGCAGTGGAGTCACTCTCTGACTCATTCAAATTGGATTTGGCATTTGACTTGTCCCTTTCTGCCCTGTTGGGAGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATTATTAAGAGTCTCCTGGAAACCAAGGTAGAATGGCTCTACTATATTCTGCAGGCATTTAATTCTGGTGATTTGGTTCGATATCAAGAATTATGCCAGGTGCATAATGCTGCTTTAAGGGCTCAACCAGCACTTGTTCAAAATGAACAGAAGCTGTTGGAAAAGATTAACATTCTCTGTCTGATGGAAATTATATTCAGCCGGCCTTCGGAAGATCGAACAATTCCCTTGAGTGTGATTGCAGAGCGCACAAAACTTTCTATCGAGGATGTGGAACATCTCCTTATGAAGAGCTTATCTGTTCATCTGATTGAGGGTATAATTGATCAAGTTGACGGCACTGTACATGTTTCCTGGGTGCAACCAAGAGTTTTGGGTATTCAACAGATAAAATCTTTAAGGGATCGGCTGGACAGTTGGACAGGAAAAGTACACACCGCATTGTTGTCCATCGAGGCTGAAACGCCTGATTTAATTGGATCATGA 1161 0.4195 MAALQYLESLRSSHPELGDWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYNNFITDFETKINLLKLAHFAVMVSRQYSEKEAAIGYLEGIIEKLQATREQRIEEPILYIKMQIALFKLEQGDQKECKNLLENGKSTLDSMTDIDPTVYASYYWVSSQYHKSRQEFAEFYKSALLYLAYTAVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLETKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVDGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01735 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 IPR000717 -
Trre9g01735 386 Gene3D - 227 343 - -
Trre9g01735 386 Pfam PCI domain 238 343 IPR000717 -
Trre9g01735 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Trre9g01735 386 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 174 373 - -
Trre9g01735 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Trre9g01735 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 4 384 IPR035298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01735 Trre-Chr9 15537301 15541714 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01735 K03039 - gmx:100804455 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01735 9 15537301 15541714 Trre9g01735 9 15537301 15541714 ECH