Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01658 ATGGGTAAAGGTAATCCACAGAAATCAGGCCCCGGCGGCGACCTTCACACGGCTGCAAGGTCCGGTGATCTCATAGCCGTTCAGTCAATTTTGATTTCAAATCCTTTGACTGTTAATTCCAGAGATAAGCATTCCAGAACACCACTACATTTAGCAGCATTTTCTGGGCAAACAGAGGTAGTCAGTTACCTCTGCAAGAACAAGGCCGATGTTGGTGCTTCTGCTATGGATGACATGGCTGCGATACACTTCGCGGCGCAGAAGGGACATTTAGAAGTTGTTAAGGCTCTGGTTTCAGCTGGTGCCTCTTTCAAATCCTCTACTCGTAAAGGGGTGACTCCATTACACTTTGCTGCTCAAGGTTCCCATCTGGAACTTGTCAAGTATTTGGCCAAGAAAGGGGCAAGTCTCACTATCAAGACAAAGGCGGGAAAGACCCCTTTGGATCTCGCCACCAATGATGAAGTCCGCACCTTTCTGGAGGGATTTAAAAAATCAGATAAGAATGAAGAGTCGAGAAACGAAGATAAAGCCGAAGGATCTGATCCAAAAGAAAATGAAGAATCTGATACAAAGGCAGCTGAAGAATCTGATCCAAAGGCATCATCCTCTTTGGGATCTGAAGGTAATTTGAGTAGTGAACCTCCTGCGGCTGGTGTCGATGAAGAAAACGGTGAGAGGGAGAAGAGGAAGAGTAATGAAGATGTTGCAAGAGAAGACTCATCACAACTGAAAAAGGCGAAAGTTAAGTTAAGCCATCTCCAAAGTTCAGATGATGCCCAAGAAGAAGAAAATCATTAG 801 0.4507 MGKGNPQKSGPGGDLHTAARSGDLIAVQSILISNPLTVNSRDKHSRTPLHLAAFSGQTEVVSYLCKNKADVGASAMDDMAAIHFAAQKGHLEVVKALVSAGASFKSSTRKGVTPLHFAAQGSHLELVKYLAKKGASLTIKTKAGKTPLDLATNDEVRTFLEGFKKSDKNEESRNEDKAEGSDPKENEESDTKAAEESDPKASSSLGSEGNLSSEPPAAGVDEENGEREKRKSNEDVAREDSSQLKKAKVKLSHLQSSDDAQEEENH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01658 266 SUPERFAMILY Ankyrin repeat 15 153 IPR036770 -
Trre9g01658 266 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Trre9g01658 266 PRINTS Ankyrin repeat signature 93 107 IPR002110 GO:0005515
Trre9g01658 266 PRINTS Ankyrin repeat signature 45 60 IPR002110 GO:0005515
Trre9g01658 266 PIRSF ILK 228 266 - -
Trre9g01658 266 PIRSF ILK 73 208 - -
Trre9g01658 266 PIRSF ILK 3 79 - -
Trre9g01658 266 ProSiteProfiles Ankyrin repeat region circular profile. 44 71 - -
Trre9g01658 266 Pfam Ankyrin repeats (3 copies) 15 73 IPR002110 GO:0005515
Trre9g01658 266 Pfam Ankyrin repeats (3 copies) 82 160 IPR002110 GO:0005515
Trre9g01658 266 MobiDBLite consensus disorder prediction 162 197 - -
Trre9g01658 266 PANTHER ANKYRIN REPEAT PROTEIN 10 217 - -
Trre9g01658 266 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Trre9g01658 266 MobiDBLite consensus disorder prediction 220 266 - -
Trre9g01658 266 ProSiteProfiles Ankyrin repeat profile. 110 142 IPR002110 GO:0005515
Trre9g01658 266 Gene3D - 13 184 IPR036770 -
Trre9g01658 266 SMART ANK_2a 110 139 IPR002110 GO:0005515
Trre9g01658 266 SMART ANK_2a 77 106 IPR002110 GO:0005515
Trre9g01658 266 SMART ANK_2a 44 73 IPR002110 GO:0005515
Trre9g01658 266 MobiDBLite consensus disorder prediction 162 266 - -
Trre9g01658 266 ProSiteProfiles Ankyrin repeat region circular profile. 77 103 - -
Trre9g01658 266 ProSiteProfiles Ankyrin repeat region circular profile. 110 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01658 Trre-Chr9 14514923 14516732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01658 15 248 Miscellaneous Gene Families AT5G60070 28.163 8.78e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01658 - - psat:127119852 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01658 9 14514923 14516732 Trre9g01658 9 14514923 14516732 ECH