Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01570 ATGGGTTTGCCAAGGTTTGGTCGTCCAAAGAATGGTGATGAATTGAGCTCAAATCTATTTGTAGCAAATTGTGGACCAGCTGTGGGAATTTCTGATGATGATATTGCTTCTGTTTTCTCCAAATTTGGTGAACTCAATGGTGTTTATGCAGCTGATGATAGTGGCACACGTGTTATTGTATCTTATTCTGAAGTGGGTTCTGCTCAATCTGCTTTAATGGCATTACATGGACAACCTTGTCATGAACTAGGTGGTCGTTCTTTGTATATTCGTTATTCAGTTCTTCAGCCAAATCCACAGGATCAAGTGAAGGACTTGGTTTCTGTATCCATGACGACCTCAGATCTGAACATTCTAGGCATTTACCTGGTGCATGACTTCGTTAGTGCTAAAGAAGAAGAGGAATTGCTCCAAGCTGTTGACAGTAGGCCTTGGAATTGTCTTGCCAAAAGAAGGGTTCAACACTATGGTTATGAGTTTTGTTATGATATTCGGAATGTTAATACAAAGCGATGCTTAGGCGAACTTCCCCCATTTCTTTCTCCATTACTTGAAAGAATATCATCATGTCCAGCTTTCAAGAATGTTGACCCTGATAGCATAGTTTTGGACCAACTTACGGTAAATGAGTACCCACCTGGAGTCGGTTTGTCGCCTCATATAGACACTCATTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTAGCAGGGCCGTGTATAATGGAATTCAGACGATATGAAGATGGTGATTGGCGCCCTAAAGTTGCCTCAAGTACTCTTACAAAAGGAGAAAGTCCAGAAGATGGTTCAAATTGTATAAAGAAGGCTATCTATCTCCCCCCTAGATCTTTGCTACTCTTATCCGGTGAAGGACGATACGCATGGCATCATTACATTCCACACCACAAGATAGACAAAGTGAACGATAGAGTCATTAGAAGGGCTTCAAGAAGGGTATCTTTTACATTGTGTAAGGTTAGAGCAGGTTTGTGCAAATGTGAATTTCCTCAGTATTGCGACTCTCAAAGATAA 1035 0.4068 MGLPRFGRPKNGDELSSNLFVANCGPAVGISDDDIASVFSKFGELNGVYAADDSGTRVIVSYSEVGSAQSALMALHGQPCHELGGRSLYIRYSVLQPNPQDQVKDLVSVSMTTSDLNILGIYLVHDFVSAKEEEELLQAVDSRPWNCLAKRRVQHYGYEFCYDIRNVNTKRCLGELPPFLSPLLERISSCPAFKNVDPDSIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLAGPCIMEFRRYEDGDWRPKVASSTLTKGESPEDGSNCIKKAIYLPPRSLLLLSGEGRYAWHHYIPHHKIDKVNDRVIRRASRRVSFTLCKVRAGLCKCEFPQYCDSQR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01570 344 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 202 328 IPR005123 -
Trre9g01570 344 Pfam 2OG-Fe(II) oxygenase superfamily 170 323 IPR027450 -
Trre9g01570 344 FunFam ALKylated DNA repair protein AlkB homolog 114 331 - -
Trre9g01570 344 Gene3D - 7 112 IPR012677 -
Trre9g01570 344 PANTHER OXYGENASE-RELATED 107 340 IPR032857 GO:0070988
Trre9g01570 344 SMART rrm1_1 18 91 IPR000504 GO:0003723
Trre9g01570 344 SUPERFAMILY Clavaminate synthase-like 120 324 - -
Trre9g01570 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Trre9g01570 344 Gene3D - 113 332 IPR037151 -
Trre9g01570 344 SUPERFAMILY RNA-binding domain, RBD 11 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01570 Trre-Chr9 13663368 13666686 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01570 K10770 - gmx:100777529 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01570 9 13663368 13666686 Trre9g01570 9 13663368 13666686 ECH