Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01506 ATGACCTTTTCAGATGACGAAGACGAAAATCTAGCTCAATTTCTCGAATCAGAAGTCCTCTCTGAGGTCTCTGACAAGGAAGAGGAAAATGCTGAGGAGCATAAAGCAAAGAGAAAACGCATAGAAGAGGCTGAGAGTAATAATCAGGGTACTAAACAGTCTTCTGGTTCATCATCTGAGCCTAAGAACTGTGTTGTTAATAACGCCGTTGTACCGAGAAGGATTGAGACTGGTTTTTTCAGCAAAGTTCCACCAGAACTTTACCATCATATTCTTAAGTTTCTGTCATCTGAGGACCTTATTTCTTGTTCGTTAGTCTGTAGGTTTCTAAGTTATGCTGCATCTGATGAAGCTTTGTGGCGTCGCCTGTATTGTATGCGATGGGGTGTTCTTCCCCCCTCGAGGAAGTTAAGGGACTGCCCGTGGAAAAAGCTATACATTCAGCGTGATGAAAAAGACATGGCTGAACTTGTCAGAAGCTGCCAAAATGAGTTTAAGGAGTACTATATTCAAATGCAAGCAGCTAAGAGAAGTCAAGCACCTCATCCTTCACAGTTGAAGGATGATAGCCTAATTCTTGACAAAACATTAGCTGATCAAGTCTCATCATGGAAAAGCAGCAGGGGCCTTAGTGATACAGTGGTGACTGACCATGCTTGTTCTGGGAAGACATGCTCATACTACCAAATTGGAGATGTATTTATTTGTGAGAAGACCGGACAAGTTCATGTTTGTGATGAAACATGCAAAGAAGTAGTTTTGGATCCCGCCGATGAGCTTCTGGTCTGTACAATATCAGGGCACTGTTTTGATAGATTATTATCGCCATCTGAAATGGAGCCCGACTTTGAGCAGCAGCAAGGTGTTGCAGCAGATGAGGAAGAACCATTTATGGGATCTGGCCGTTTTGCGCGAGCTTATTTGCTGGGATACAATTGTGCTGATGAAAAGGAGCTTGAAGCTACTTTGAGGTATTGCTGA 981 0.4292 MTFSDDEDENLAQFLESEVLSEVSDKEEENAEEHKAKRKRIEEAESNNQGTKQSSGSSSEPKNCVVNNAVVPRRIETGFFSKVPPELYHHILKFLSSEDLISCSLVCRFLSYAASDEALWRRLYCMRWGVLPPSRKLRDCPWKKLYIQRDEKDMAELVRSCQNEFKEYYIQMQAAKRSQAPHPSQLKDDSLILDKTLADQVSSWKSSRGLSDTVVTDHACSGKTCSYYQIGDVFICEKTGQVHVCDETCKEVVLDPADELLVCTISGHCFDRLLSPSEMEPDFEQQQGVAADEEEPFMGSGRFARAYLLGYNCADEKELEATLRYC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01506 326 CDD F-box_AtSKIP31-like 80 125 - -
Trre9g01506 326 ProSiteProfiles F-box domain profile. 77 123 IPR001810 GO:0005515
Trre9g01506 326 Coils Coil 24 54 - -
Trre9g01506 326 Pfam UL92 family 224 286 IPR004289 -
Trre9g01506 326 FunFam F-box family protein-like 67 154 - -
Trre9g01506 326 Gene3D - 65 155 - -
Trre9g01506 326 SMART fbox_2 83 123 IPR001810 GO:0005515
Trre9g01506 326 MobiDBLite consensus disorder prediction 21 63 - -
Trre9g01506 326 MobiDBLite consensus disorder prediction 47 63 - -
Trre9g01506 326 MobiDBLite consensus disorder prediction 27 46 - -
Trre9g01506 326 PANTHER F-BOX ONLY PROTEIN 3 4 324 - -
Trre9g01506 326 SUPERFAMILY F-box domain 72 149 IPR036047 GO:0005515
Trre9g01506 326 Pfam F-box-like 82 125 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01506 Trre-Chr9 12888107 12891056 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01506 - - gmx:100778591 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01506 9 12888107 12891056 Trre9g01506 9 12888107 12891056 ECH