Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01504 ATGGCACCAGCTAGGGTTTTCGGAGCATTTGCCGGCAGAGCACTCATGGCGGCTGCGGCCAAAGGAGCTACAAAGAAAGCTGCTGCTTCTGCCGAAGCTGCTCCCAAAACCGTCGTGAAGAAAACGGTTAAGAGAACGGTTACGGTCAAGAGTAACGGAGGTATACAGAAAGTTGTTCCGGTCACTTCTGAGCTCGGAAGTTTCATCGGTTCACCTGAAGTTTCTAGAACTGAAGCTGTTAAGAAAGTTTGGGATTACATTAAGCTTCAGAATCTTCAGAATCCTGATAACAAGAAGGAGATCTTTTGTGATGACAAGCTGAAGACCATTTTCGATGGGAAAGATAAAGTTGTATTCACTGAAATTGCCAGATTGTTGGCTAACCATTTCGTGAAATCATCCTGA 405 0.4494 MAPARVFGAFAGRALMAAAAKGATKKAAASAEAAPKTVVKKTVKRTVTVKSNGGIQKVVPVTSELGSFIGSPEVSRTEAVKKVWDYIKLQNLQNPDNKKEIFCDDKLKTIFDGKDKVVFTEIARLLANHFVKSS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01504 134 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 25 131 - -
Trre9g01504 134 Gene3D SWIB/MDM2 domain 48 134 IPR036885 -
Trre9g01504 134 SMART swib_2 55 134 IPR019835 -
Trre9g01504 134 CDD SWIB-MDM2_like 59 130 - -
Trre9g01504 134 ProSiteProfiles SWIB/MDM2 domain profile. 54 132 IPR003121 -
Trre9g01504 134 Pfam SWIB/MDM2 domain 59 130 IPR003121 -
Trre9g01504 134 SUPERFAMILY SWIB/MDM2 domain 49 132 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01504 Trre-Chr9 12881049 12882162 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre9g01504 SWIB 7.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01504 - - gmx:100779127 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01504 9 12881049 12882162 Trre9g01504 9 12881049 12882162 ECH