Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01485 ATGGTCCCTAAACCCATCATAATAACAAGCAAACAACCACCTACAATTCCTATCCCTCCATTTAACGTCTCCTCCATCAAAACCAAAGAAAACCCCCAAATTTCACAAACTCAAACACTTAAAACTACCACCACTAAAACTCTTCCTACACCCCCTCCTACTACCACCACCACCACCCACAACCTCAAAAACACAACCAAAAAACAAGAACCATCATTTCCATCACTATTAATCAACACATTTGATGACATCATAAACAATTTCATAGACCCACCAATAAAACCATCAACAGATCCAAGACATGTTTTATCCCAAAACTTCTCCCCAGTACTAAACGAACTCCCTCCAACACAATGCAAAATCATTAACGGCACTTTACCACCGTCACTTAACGGCGCCTACATAAGAAACGGTCCAAATCCACAATTCCTTCCACGTGGACCTTACCACCTCTTTGACGGTGATGGCATGCTTCACGCCGTTACAATCTCAAACGGAAAAGCCACACTCTGTAGCCGTTACGTTAAAACCTACAAATACAAAACCGAAAACGAAGCCGGTTATCCACTTTTCCCAAACGTGTTTTCCGGTTTCAATTCGCTTATTGCTTCCGCCGCACGTGGATCCATATCCGCGGCACGTGTCATAACCGGTCAGTATAATTTATCTAACGGCATTGGATTAGCAAACACCAGTTTAGCTCTGTTTGGTAACCGTCTTTTCGCTCTGGGAGAATCCGATCTTCCTTATGAAATTAAATTAACACAAAATGGTGATATTGAAACAATTGGCCGTTATGATTTTAACGGCAAACTCTCCATGAGTATGACGGCACATCCAAAAATTGATCCTGAAACAGGCGAAACTTTTGCTTTCCGTTACGGTCCAATTCCACCTTTTTTAACCTATTTCCGTTTTGATTCTAACGGAGTTAAACATAACGACGTTCCCGTTTTCTCCATGACAAGACCATCATTTCTTCATGATTTCGCCATTACTAAAAAATACGCTGTATTTGCCGATATACAGCTCGGAATGAATCCACTTGAAATGATTTCAGGTGGATCTCCGGTAGGTTCCGATCCTTCAAAAATTCCAAGGATCGGAATACTTCCTCGTTACGCTAACGATGAGTCAAAGATAAAGTGGTTTGATGTGCCAGGGTTTAATATAGTTCATGCCATTAATGCCTGGGATGATGAAGAAGATGGAAAAACGGTTACACTTATAGCACCAAATGTTCTCTCCATTGAACATACAATGGAGAGATTGGACCTTGTTCATGCAATGATTGAGAAAGTGAAAATTAACATTGAAACAGGGATTATAACAAGACAACCATTATCAGCAAGGAATCTTGATTTTGCAGTTTTAAATAGTAAGTTCATGGGGAAGAGGAATAGGTTTGTTTACGCGGCGATCGGGAATCCGATGCCGAAGATTTCAGGAGTTGTTAAGATTGATGTGTTAAAAGGAGAGGAAGTTGGATGTAGAATTTATGGAGAAGGTTGTTATGGAGGTGAACCGTTTTTCGTGGCGAATGAGGATGGTGTTGAGGAAGATGATGGTTATTTGGTGAGTTATGTGCATGATGAGAAAAAGGGAGAGTCGAGGTTTATAGTGATGGATGCGAAGTCGTCGGAGTTGGAGATAGTGGCGGAGGTGAAGTTGCCAAGGAGGGTGCCGTATGGTTTTCATGGATTGTTTGTTAGTGAGAGTGACATGAGGAACTTGTCGGTGTCATAA 1746 0.4135 MVPKPIIITSKQPPTIPIPPFNVSSIKTKENPQISQTQTLKTTTTKTLPTPPPTTTTTTHNLKNTTKKQEPSFPSLLINTFDDIINNFIDPPIKPSTDPRHVLSQNFSPVLNELPPTQCKIINGTLPPSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAVTISNGKATLCSRYVKTYKYKTENEAGYPLFPNVFSGFNSLIASAARGSISAARVITGQYNLSNGIGLANTSLALFGNRLFALGESDLPYEIKLTQNGDIETIGRYDFNGKLSMSMTAHPKIDPETGETFAFRYGPIPPFLTYFRFDSNGVKHNDVPVFSMTRPSFLHDFAITKKYAVFADIQLGMNPLEMISGGSPVGSDPSKIPRIGILPRYANDESKIKWFDVPGFNIVHAINAWDDEEDGKTVTLIAPNVLSIEHTMERLDLVHAMIEKVKINIETGIITRQPLSARNLDFAVLNSKFMGKRNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRIYGEGCYGGEPFFVANEDGVEEDDGYLVSYVHDEKKGESRFIVMDAKSSELEIVAEVKLPRRVPYGFHGLFVSESDMRNLSVS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01485 581 Pfam Retinal pigment epithelial membrane protein 107 571 IPR004294 GO:0016702
Trre9g01485 581 PANTHER BETA-CAROTENE DIOXYGENASE 110 571 IPR004294 GO:0016702
Trre9g01485 581 MobiDBLite consensus disorder prediction 30 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01485 Trre-Chr9 12706539 12708284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01485 K09840 - gmx:100777875 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01485 9 12706539 12708284 Trre9g01485 9 12706539 12708284 ECH