Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01483 ATGAAAGCCATCGTTGTTCCACCACCACCGGCACCACCCATCCGCCGCAATGCAAACAAAACTTCAACCACCACTTGTCCTTCTTCCAACCACCAACTTCACCTTCGTCTACCTCTCTACAACCCCAACCACAAAAACCTCTCTCTCCATCCCAATTTCCCTCATCAACCTTCTCTACAACCGATCACTCCTCCGGTGAAGAAAAACAATAACAAAAAGGAGAAGAAGAATAATAAGAGAAGAAAATGTGACACAACTTCACACATTTTGCCCTTAATGGACGCACTTCACTTTCCAATACCAATTGATATTTACACCTCTTTTGTCAAAGAATGCACTTTTTCCGGCGACGCAGAAACCGCTATTGAGTTGCATACACACATTATAAATAGTGGCATTGAACTTCCATTAAACTTGCTCAATCGGATTCTTATCATGTTTGTTTCGTGCGGTTTGTTGGAGAATGCGCGCCATTTGTTTGATAAAATGTCTGTTAGGAATTTTCATTCTTGGGCGATTTTGTTTGTTGCTTATTATGAAAATTCTGATTATGAGAATGCCACGGATGTATTTCTCGGTATGTTATGTCGATTGGGTATGATTGAGTTTCCGTTTCCTCCATGGATTTGGTCTTGTTTTCTCACGGCTTGTGCCTGCACTGTGAATGTTCCTCTAGGAATGCAAGTCCATGGTTGTTTATTAAAGCTTGGTGCTTGTGACCATGTGCTTGTCAGTAGCTCTTTGATCAGATTTTATGGGAGGTTTAAGTGTTCGGAAGATGCAAACGTTGTTTTTAATAAAGTGTCGCGGCATAATACGTTGACTTGGACTGCTAAAATTGTCAGTGGTTGTAAAGAAAGGCATTTCTCTGAGGTTCTTGGTGATTTCAAGGAGATGGGAAGGGTGGGGATAAAGAAGGACAGTTTTACATTTTCCAGTGTTCTCAAAGCTTGTGGTAGGATGCAGAATCATGGAAGCTGCGGTGAACAGGTTCATGCTGATGCAATCAAACTGGGACTTGACTCGGATAACTATGTGCAGTGTAGTTTGATAGCTATGTACGGAAGAAGTCGGTTACTGAGAGATGCAAAAACGGTGTTTGAAATGACCCGATATGAAAGAAATGTCGATAGTTGGAATGCCATGTTTATGGGTTTCATACAGAATGGTTTGTACATTGAAGCTGTTAAGTTTGTGTATCAGATGAAGGAGGCTGGAGTGCAGCCACATGAACCATTGCTTGAAAAACTAAGAATTGCTTGTGGTAGTTCTACATTTTCAAGCATGAACTAA 1293 0.4114 MKAIVVPPPPAPPIRRNANKTSTTTCPSSNHQLHLRLPLYNPNHKNLSLHPNFPHQPSLQPITPPVKKNNNKKEKKNNKRRKCDTTSHILPLMDALHFPIPIDIYTSFVKECTFSGDAETAIELHTHIINSGIELPLNLLNRILIMFVSCGLLENARHLFDKMSVRNFHSWAILFVAYYENSDYENATDVFLGMLCRLGMIEFPFPPWIWSCFLTACACTVNVPLGMQVHGCLLKLGACDHVLVSSSLIRFYGRFKCSEDANVVFNKVSRHNTLTWTAKIVSGCKERHFSEVLGDFKEMGRVGIKKDSFTFSSVLKACGRMQNHGSCGEQVHADAIKLGLDSDNYVQCSLIAMYGRSRLLRDAKTVFEMTRYERNVDSWNAMFMGFIQNGLYIEAVKFVYQMKEAGVQPHEPLLEKLRIACGSSTFSSMN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01483 430 MobiDBLite consensus disorder prediction 50 84 - -
Trre9g01483 430 Gene3D Tetratricopeptide repeat domain 202 323 IPR011990 GO:0005515
Trre9g01483 430 Gene3D Tetratricopeptide repeat domain 78 201 IPR011990 GO:0005515
Trre9g01483 430 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g01483 430 MobiDBLite consensus disorder prediction 50 67 - -
Trre9g01483 430 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 422 IPR046960 GO:0003723|GO:0009451
Trre9g01483 430 MobiDBLite consensus disorder prediction 16 30 - -
Trre9g01483 430 NCBIfam pentatricopeptide repeat 378 409 IPR002885 -
Trre9g01483 430 Gene3D Tetratricopeptide repeat domain 324 425 IPR011990 GO:0005515
Trre9g01483 430 MobiDBLite consensus disorder prediction 1 30 - -
Trre9g01483 430 Pfam PPR repeat 378 407 IPR002885 -
Trre9g01483 430 Pfam PPR repeat 143 167 IPR002885 -
Trre9g01483 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01483 Trre-Chr9 12685531 12686823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01483 299 426 Glycoside Hydrolase AT3G49170 35.878 3.94e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01483 - - tpra:123907457 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01483 9 12685531 12686823 Trre9g01483 9 12685531 12686823 ECH