Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01408 ATGGCGACAATTAGGCCATTACCGGAGTCTGTTCGCAGTTCAATTCGTTCCGGCATTTCCTTGTTCGACTTCACAAGAATTGTTGAGGAACTTGTTTTCAATAGCCTCGATGCTCGCGCTACAAAGGTATCAGTGTTTGTGAATATTGGAAGTTGCTACTTAAAAGTAGTTGATGATGGAGGTGGAATTACTCGAGATGGACTGGAATTGGTAGGAGAACGATATGCAACATCAAAATTTCTTAATTTGGCTGACCTAAATACCACAAGTGAAAACTTCGGTTTTCGTGGTGAAGCTTTAGCTTCCATTTCCGAAGTCTCTTTGTTGGAAATAGTGACAAGAGCTTATGGAAGGCCAAATGGATATAAAAAAGTATTGAAGGGGTGCAAGTGTTTATATCTTGGTATTGATGATGATAGAAAGGAAGTAGGCACAACAGTCATTGTCTGTGAAATATTTTACAACCAACCAGTTCGGAAGAAACACATTCAATTCAGCCCCAATAAGGTACTTCAATCAATCAAGAAATGTGTAATGCGGCTGGCACTTGTATGCCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAGCTTTTCTGCTCACATTCTGCTGCTTCTCCACTGTCACTTGTAACCACTGGCTTTGGGGTGGAGGTCACAAACTCTCTTCATGAATTAGAAGTTGAAAATGATATCGTAAAGCTTACTGGATACATATCAGGTCCCTGCAATACCCTGGATATGAAGGCCTTACAGTATCTCTATATCAACTCACAATTCGTTTGCAAGGGCCCTATTCACAAGCTTTTAAGTCAATTGGCCATTAGGTTTGAGCATCATAACTCATGGAGTGCTGATAATGAATGCCAAAATAGAAAGAGAGGAAGATCTCAACCATGTCCGGCATATATCTTGAATTTAATGTGCCCTCGCTCTTTATATGTTTTGAGCTTTGAGCCATCAAAAACTTATGTTGAATTCAAGGATTGGTCTCCAATACTAAACTTCATCGAAAAGGTCATTAAACAGTTCTGGAAGGGAAGCATAGCATGTGGAGATTCCTCCAACAAAGCCACTTCTATGGTTCAAGGAGATCAACTGGAGAAAGTAGATTTAGATGTCAACAACATTTCAGTGGAAACAGATATATCAAAATTTGGAAACCAAAATCGTAAAGATTGTTTAGACCCCTTCTTTTCCACTTCAGACAAGCTAACAGAAGATGACAATCATCAATGCAACAGGGAGGATGTTAGAACCACTATTGGTTACTTACCTCAAAGGACTGAGATGTTCAAAGAGAAACAGAATAAGGGAGGGTTTCACTGTCAGACTGGTTATTCTGGCAATTTACTGGATGTTTCATTCGCCAAAAGCATACCTACCACTATGAAAAAGAATAACAACTTTTTGACGTACGATAAAGATTTACTGCAAGGAGTTTACTTTTTGGATGCTATGCGTCCTGCTGTAGAAAGTTTCTATGATAATATACCTTTTTATGCAACAAGTTCTTCACATGGAAGAAAATTAAATAAAGTAGATGCTAGTGTGATCTGTGAATCACTTGAAAGTGATTCCCTTTATGACTCCTATGGGTTTGGTTATGATGTAGAGATTCGTGGGGATTTTCAAAAGCCTTTTCTGAAGAGCTGCTCTACACAAAAAGGAAGTATCCTGCATGAGAAGACTTCGCTCGTAAATGATGAACTTGAACTCCAAACTTATAGCTTTTGGAGCAAGCAAAATCTAGGGGAGGATTGTTTCAGTGGTAGTAAGGATTTATATACCCGTCCCTGCGTAGAATTTGCAAAAAAATTAAAGATGTCAGAAGATTCTGATTTTCTTGTAAAGGCATGGCCTGAAGAAAAACGTTTCCCTCCAGATTCATGGTATTCAGCAACAGAAATAGGTTACTCTGGTTCTGATGATCGGTTCTCAAACTCTGAATGGGATCTTGTCTATCAAGAGCCCTCATCTCGAGCTACTGCATTGGATATTTATCATACCAATGATATTAATGATCTAAGAGAAGAATCTAGATGCTATAAAAGGATTCATCGTACACCAACTTTTGATGATGAAGAAAATGAGAACAACTTCAGTTACGATCTTGGAGGAGCATCTAGATACTGTACAAGGATCTATCGTACACATATTTTTGATGAGGAAGAAAATGGGCACAACTTCAGTTATGATATGTCAAGGAATGTTAACCGGCATCCCTGCACCTCAAGTTTTGCCAATAGTGGATATAGTTTTGATGGTGCTGTTGATTGTAATGAAATAATCAACAGATCGGTTAACTGGCCTGATTTTGGTGATGCACATTTCACAGAAAGGTCGGTTATTTTAAATGAGGAGCCAGAATGGCTGTTACCTGAGTCGTGTGTTGGAAACTGTAAGAGACCCAACATTATCAAAGGCGAAAAGGATCGTTATAGGCATCCAACTTTGGAAAAGACTCGTGTAAGATCTAAAAGAAGCTTCTCAGCCCCTCCATTTCATAGAAGTAAAAGGAGGTTTTTGTCTTTAAATCAGCCTCCCAAAATGGTAGCTAAAAGACCTACCGGTCAAGCATCCCACCCTGCTTCCAATCTTCTAGAAGCTAGTGATTTTAAATACTCTCAACATCCTCCTGGTGCTCTTAATCCCAACAATGAAGATCTATTGGAAGATCTCAAAACGAATGTGACACGGAGTTCGGAGGTTCTGGGGGCTACAAAGGTTAATGACATTGCTGAGATTGATGGGTCTGAAAATTCCAGAGTTCAAAAGAATGATCCACTCGGGGAATTGAAATCTAGGAAAGTGCAAGATTCCATAGATTATGGGACCAAATGGAGGAGCTTCTCACCTCAACTTCCAAAGAATGATAAACTAATTGATAGTCACAGTCAAAACAATATACTTGACATCTCTTCTGGATTTTTGCATCTTGCTGGAAATTCACTAATACCCGAAACTATCAGTAAGAAATGCCTCGAGGATGCAAAAGTTCTCCATCAGGTGGATAAGAAATTCATTCCAATTGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGCATGCTGGAGACGAAAGAATCAGGCTGGAAGACTTGCGTCAAAAGGTATTATCTGGAGAAGCAAAAGCAATAACCTATCTAGATGCTGAACAGGAGCTGGTGCTACCAGAGATTGGTTATCAACTACTTCATAGTTACAGTAAACAGATTAAAGATTGGGGATGGATCTGTAACATTCACAGTCACAATTCTGAAACCTTTAGAAGGAATTTGGATGTTCTCAACAGACAACAAATGACCATCACTCTTGTTGCGGTACCGTACATTTTAGGTGTCAATTTAAACGATGTTGATCTTTTAGAGTTTCTTCAGCAGCTAGCTGATACTGATGGATCATCAACAATGCCACCCTCCGTTGTACGACTCCTAAATTCAAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTCTAGTTGAAGAGCTAAATCATACATCACTCTGTTTCCAGTGTGCTCATGGGAGACCAACCACTGTTCCTCTAGTCAACTTGGAGGCACTGCATAATCAAATTGCCAAGCTTGGACTGATGAATGAGAGCTCAAGTAACAAGTGGCATGGATTACAAAGACATAAAGTGTCTATTGAACGTGCAGTACAGCGTTTAAGTTCTGCTACAAGGAGTTGA 3726 0.3943 MATIRPLPESVRSSIRSGISLFDFTRIVEELVFNSLDARATKVSVFVNIGSCYLKVVDDGGGITRDGLELVGERYATSKFLNLADLNTTSENFGFRGEALASISEVSLLEIVTRAYGRPNGYKKVLKGCKCLYLGIDDDRKEVGTTVIVCEIFYNQPVRKKHIQFSPNKVLQSIKKCVMRLALVCPNISFKVVDIEREDELFCSHSAASPLSLVTTGFGVEVTNSLHELEVENDIVKLTGYISGPCNTLDMKALQYLYINSQFVCKGPIHKLLSQLAIRFEHHNSWSADNECQNRKRGRSQPCPAYILNLMCPRSLYVLSFEPSKTYVEFKDWSPILNFIEKVIKQFWKGSIACGDSSNKATSMVQGDQLEKVDLDVNNISVETDISKFGNQNRKDCLDPFFSTSDKLTEDDNHQCNREDVRTTIGYLPQRTEMFKEKQNKGGFHCQTGYSGNLLDVSFAKSIPTTMKKNNNFLTYDKDLLQGVYFLDAMRPAVESFYDNIPFYATSSSHGRKLNKVDASVICESLESDSLYDSYGFGYDVEIRGDFQKPFLKSCSTQKGSILHEKTSLVNDELELQTYSFWSKQNLGEDCFSGSKDLYTRPCVEFAKKLKMSEDSDFLVKAWPEEKRFPPDSWYSATEIGYSGSDDRFSNSEWDLVYQEPSSRATALDIYHTNDINDLREESRCYKRIHRTPTFDDEENENNFSYDLGGASRYCTRIYRTHIFDEEENGHNFSYDMSRNVNRHPCTSSFANSGYSFDGAVDCNEIINRSVNWPDFGDAHFTERSVILNEEPEWLLPESCVGNCKRPNIIKGEKDRYRHPTLEKTRVRSKRSFSAPPFHRSKRRFLSLNQPPKMVAKRPTGQASHPASNLLEASDFKYSQHPPGALNPNNEDLLEDLKTNVTRSSEVLGATKVNDIAEIDGSENSRVQKNDPLGELKSRKVQDSIDYGTKWRSFSPQLPKNDKLIDSHSQNNILDISSGFLHLAGNSLIPETISKKCLEDAKVLHQVDKKFIPIVAGRTLAVIDQHAGDERIRLEDLRQKVLSGEAKAITYLDAEQELVLPEIGYQLLHSYSKQIKDWGWICNIHSHNSETFRRNLDVLNRQQMTITLVAVPYILGVNLNDVDLLEFLQQLADTDGSSTMPPSVVRLLNSKACRGAIMFGDSLLPSECSLLVEELNHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLGLMNESSSNKWHGLQRHKVSIERAVQRLSSATRS 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01408 1241 Gene3D - 1006 1194 IPR042120 -
Trre9g01408 1241 SUPERFAMILY Ribosomal protein S5 domain 2-like 219 348 IPR020568 -
Trre9g01408 1241 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1199 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Trre9g01408 1241 Pfam DNA mismatch repair protein, C-terminal domain 218 347 IPR013507 GO:0005524|GO:0006298|GO:0030983
Trre9g01408 1241 Gene3D - 2 207 IPR036890 -
Trre9g01408 1241 SMART DNA_mis_repair_2 214 349 IPR013507 GO:0005524|GO:0006298|GO:0030983
Trre9g01408 1241 Pfam MutL C terminal dimerisation domain 1002 1163 IPR014790 GO:0005524|GO:0006298
Trre9g01408 1241 Gene3D - 1047 1158 IPR042121 -
Trre9g01408 1241 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 118 - -
Trre9g01408 1241 Gene3D - 214 352 IPR014721 -
Trre9g01408 1241 SUPERFAMILY DNA mismatch repair protein MutL 1001 1194 IPR037198 -
Trre9g01408 1241 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Trre9g01408 1241 SMART MutL_C_2 1003 1163 IPR014790 GO:0005524|GO:0006298
Trre9g01408 1241 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 201 IPR036890 -
Trre9g01408 1241 FunFam DNA mismatch repair endonuclease MutL 1 213 - -
Trre9g01408 1241 FunFam MUTL protein homolog 3 1047 1158 - -
Trre9g01408 1241 NCBIfam DNA mismatch repair endonuclease MutL 4 376 IPR002099 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01408 Trre-Chr9 12016996 12026870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01408 K08739 - gmx:100788019 1669.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01408 9 12016996 12026870 Trre9g01408 9 12016996 12026870 ECH