Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01392 ATGACCGAAGCCGAAGAATCCTCATCGTATCCTCCAATTGACCCAGTCAACTTCGATCTCATCATCGTTGGCACTGGCCTAACCGAATCCGTAATTGCCGCTGCCGCATCGGCAGTCGGAAAAACCATCCTCCACCTTGACCCTAACTCCTTCTACGGAAGCCATTTCGCTTCTCTCTCCCTCGAAGATCTCACTTCTTACCTCAATTCCCCTCCCAAATCCATCACCACCGAAAAATCATCATCAACCGATTCCGATTACACCGTCGTAAACCTCATTCAACAACCTCTATTCTCCGATGCGGAGTTAATTTCGTGCGATTCCGTTGAGGAATCAACGTTCCTTCGTGAAAATTCGAGAAAATTCAACATCGATTTGGGAGGACCTAGGGCATTATTCAGTGCTGACAAAACAATCGATCTGTTGTTGAAATCAGGTGCTGCACAGTACTTGGAGTTCAAAGGAATAGATGCGAGTCTCGTCTACAATGCGAATGAGGGTTTGATGAATGTGCCAGATTCTCGTGGAGCGATATTTAGAGATAAGAACCTTTCGCTTAAGGAGAAAAATCAATTGATGAAGTTTTTCAAGCTTGTTCAGCAACATTTGGGTGGTAATGAGGATGAGAAGATTTCAGAGGAAGATTTGGAAAGTTCTTTTGTTAGTTTTTTGGAGAAAATCGGGTTGCCGCCGAAGATAAAATCGATTCTTTTGTATGCTATAGCCATGGTAGATTTTGATCAAGAAAATGGCGAGGTTTGTAAAGACTTACTTAAAACAAAAAATGGAATAGACCGTTTAGCTCAATACAGCTCGTCTGTTGGAAGGTTTCCCAATGCACCGGGGGCTTTGCTTTATCCTATTTACGGTGAAGGAGAACTACCACAAGCCTTTTGTCGTCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTCCGGATGCCGGTTATTTCTCTGCTTACGGATAAGGTGACTGGGTCGTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATACAGTCATCAGCTAATCCTGGACCCATCCTTCACGATTCCATCAACACTGTCTTCATCGCCTAATGATTCTTCCAGTGAAAGTTTCCAGATGTTGAGTCAGAAAGACATTAAAGGAACGGTGGCTAGGGGAATATGCATCACAAGGAGTTCCATAAAGCCAGATGTATCAAATTGCTCTGTGGTGTATCCTCCTAGATCTCTATATCCTGACCAGGTTACAGCAGTCAGAGCTCTTCAGATAGGATCAAATCTCTCTGTTTGTCCTGCGGGCACCTTTGTTTTATATTTTTCCACTTTGTGCAATGATGCCGATGAAGGAAAGAAGTTACTAAAAGCATCAATGAATGCTCTTCTTACACTGCCCGTTGTTCAAAGTGACAGTGAAGATAAAAAACCTATTGTGCTTTGGAGTGCATTTTATATTCAAAAGTTAACTATGAGTAAATTTGAAGCTATCAGTTCCACTCCTACACCAGACGGAAATCTAAACTACAATGACCTTTTAGACGCAACTGAGATGCTATTTAGTCTAATGTACCCCAATGAAGAGTTCTTCCCAAAGATGACATCCCCTGAAGATACTGCAGATGATGATGAAAATGGGATAATTATGGAGAACGAATCATGA 1644 0.4215 MTEAEESSSYPPIDPVNFDLIIVGTGLTESVIAAAASAVGKTILHLDPNSFYGSHFASLSLEDLTSYLNSPPKSITTEKSSSTDSDYTVVNLIQQPLFSDAELISCDSVEESTFLRENSRKFNIDLGGPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNANEGLMNVPDSRGAIFRDKNLSLKEKNQLMKFFKLVQQHLGGNEDEKISEEDLESSFVSFLEKIGLPPKIKSILLYAIAMVDFDQENGEVCKDLLKTKNGIDRLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVISLLTDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSTLSSSPNDSSSESFQMLSQKDIKGTVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTAVRALQIGSNLSVCPAGTFVLYFSTLCNDADEGKKLLKASMNALLTLPVVQSDSEDKKPIVLWSAFYIQKLTMSKFEAISSTPTPDGNLNYNDLLDATEMLFSLMYPNEEFFPKMTSPEDTADDDENGIIMENES 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01392 547 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 96 483 - -
Trre9g01392 547 PRINTS Rab GDI/REP protein family signature 188 203 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 PRINTS Rab GDI/REP protein family signature 138 154 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 PRINTS Rab GDI/REP protein family signature 290 311 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 MobiDBLite consensus disorder prediction 528 547 - -
Trre9g01392 547 SUPERFAMILY FAD-linked reductases, C-terminal domain 376 481 - -
Trre9g01392 547 SUPERFAMILY FAD/NAD(P)-binding domain 16 349 IPR036188 -
Trre9g01392 547 Pfam GDP dissociation inhibitor 118 442 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 Pfam GDP dissociation inhibitor 17 104 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 PIRSF Rab_ger_ger_transf_A_euk 1 113 IPR001738 GO:0005968|GO:0006886|GO:0018344
Trre9g01392 547 PIRSF Rab_ger_ger_transf_A_euk 76 547 IPR001738 GO:0005968|GO:0006886|GO:0018344
Trre9g01392 547 Gene3D - 15 523 IPR036188 -
Trre9g01392 547 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 528 IPR018203 GO:0005092|GO:0007264
Trre9g01392 547 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 171 283 - -
Trre9g01392 547 FunFam Rab proteins geranylgeranyltransferase component 171 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01392 Trre-Chr9 11890069 11895965 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01392 K23460 - gmx:100795946 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01392 9 11890069 11895965 Trre9g01392 9 11890069 11895965 ECH