Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01365 ATGCTCAGAACTAACAACAACAACAAGCGTGGAGTGCTTAATCATTTCAAAACCCTAGTCACCAACTCACGGTGTTTCTGCTCGTCTTCGTCCAAAGGACCAGTGCAATATCATTCGTCTTCAGAAACAGATTTTGATGCCTCTTTTTCTCGAGACCAAATTGACATTAAAAAATGGAAGACTTTGGATGCAAGGAAGCTTGGTATTACTAGTTCTATGATTTCACAACCGTCTCAGTATGTCCTGAAACTTCTTCAGAACAAAGGGTTTAAGTCCTATTTAGTAGGTGGGTGTGTGAGAGATCTACTATTGAATAGAACTCCCAAAGATTTTGACGTGGTCACCACAGCAAAGATTTTGGAGGCGAGGAAGCAGTTTCGTCGTTCAGGTCGTCGTGCTGACGTTGTTGGGCGACGTTTTCCAGTATGCCTGGTTCATATAAAAGGTTCGATAGTAGAGGTAACCAGTTTCGAGACAGAATCAAAAACTTCCAAAGCAATGAGAAAAGTTTTACACTCTCTGCTGCCCAAATGCAATAATAAAGAAGACCGATTTCTCTACAAAAGTACCTTGCGCAGGGACTTCACGATTAATAGTTTATTTTACGATCCATTTGCCAATAAAATATATGATTATGCCAATGGAATTGCTGATTTGAGGTCCTTAAAGCTAGAAACTGTGACCCCTGCTCAGCTGTCCTTCAAAGATGATCCTGGGAGAATTTTGCGTGGATTCAGAATTGCAGCTCGTCTAGGTTTATCATTATCCAGGGAGACTGAGGATGCAATCTGGGCATGTTCTTCCCTAGTTAAGGATTTGAACAAGGATAGATTAATGATTGAATTGAACTATATGTTGTCTTATGGAGCTGCTGAGCCGTCTCTCCGCTTACTCTGGAAATTCAAATTGCTACAATTTTGGCTTCCGGTGCATGCAGCATATCTTGACGAACAGGCTACTAAAGAAGATGGCCAGGCTTCCAATATGTTGATGAAATTATTCTTCCATCTGGATAATTTGGTTGGATGCGATCGACCTTCTGATTGCACTCTATGGATTGGGTTGCTAGCATTTCACCTGGCATTAGTAAACAACCCTCAAGATGCTCTTGTGGTCTGGGTACTTGCTTCTGTTCTATATCATGGAGAGTGGGAAGAAGGCATTAAGTTTGCTAATGAACATGCAAAAATGTGTGTTAATTTTGCACCTGAAATAAAGAGGTCCAGTATAGGCAAATCAGACAAAGAAATTGCAGAAGCAGTCACTAAATTGGCATCTTTGGCGATTGACTCCATTCATGCGCTGGTTAATGTTGACTGTCTTTCTCAATCTCAGCCTAGATATCCATCTGTTCCGCGCCCTCACATGGTATTTGTATCAAAGAAAACAGGGAAAGCCGTCTCTGAAATTTTTGAAGTGCTGGTTGACGATATTAAATTTTACAAGAGTGATAGAAAAAGTGCAAAGATAAATTATGACATGCTTGGGAGTGGCCATAGTTCAGAGACTAGATTTGTTTTGGGCAAAATTATTCTTGAAACTATGCGGAGTGGAATTGTTGGAGACATGGATGGTTCTGCGGCTGAAAAGTGTCACCTTAAGACCGAGGGCACCAAGGATTTTGGCCAATTGGCGGCAAGGAAAGATAAAAGAAAGGTTTTACCAACACCAAATTTAGAGCATAGGCAAGAAAAACTCAAAAAACAGAAATTGGCTGAGAATACATGCATTGCAGAGAAGAAAACAGGCTTGGACGAATTTCCTAATTACAAGGAAACCAATGAAGAGCACCAAAAGCCAGATAAGTTGCGCCAGGAGGTTGATCTATCTATGAAGAACTCTATGCCAAATAATAAACGCCGTCATACAAAACAATTGATGAATGATGAGAAGAAAATTGCCAGTGCCAGTAAAAGTTCCATAGACCATGCTAGGCATTTGGAGACGAATGAGCATTGTACGTCATCACAATCTACAGCGTCTAAGAATAATCAGGTGATCGCCAATAGCCACAACATAAAAGCGGGTGTAGCAACAGATGAGTTAGTTGACAAAGTCGTCAATGATAAAGGAAGACAACAACCACCAAAAAGTAAGAAAAGTTTGTCTCCACTCTCCAGTTTATTCAAGAAATGCAGAAGATAA 2145 0.4051 MLRTNNNNKRGVLNHFKTLVTNSRCFCSSSSKGPVQYHSSSETDFDASFSRDQIDIKKWKTLDARKLGITSSMISQPSQYVLKLLQNKGFKSYLVGGCVRDLLLNRTPKDFDVVTTAKILEARKQFRRSGRRADVVGRRFPVCLVHIKGSIVEVTSFETESKTSKAMRKVLHSLLPKCNNKEDRFLYKSTLRRDFTINSLFYDPFANKIYDYANGIADLRSLKLETVTPAQLSFKDDPGRILRGFRIAARLGLSLSRETEDAIWACSSLVKDLNKDRLMIELNYMLSYGAAEPSLRLLWKFKLLQFWLPVHAAYLDEQATKEDGQASNMLMKLFFHLDNLVGCDRPSDCTLWIGLLAFHLALVNNPQDALVVWVLASVLYHGEWEEGIKFANEHAKMCVNFAPEIKRSSIGKSDKEIAEAVTKLASLAIDSIHALVNVDCLSQSQPRYPSVPRPHMVFVSKKTGKAVSEIFEVLVDDIKFYKSDRKSAKINYDMLGSGHSSETRFVLGKIILETMRSGIVGDMDGSAAEKCHLKTEGTKDFGQLAARKDKRKVLPTPNLEHRQEKLKKQKLAENTCIAEKKTGLDEFPNYKETNEEHQKPDKLRQEVDLSMKNSMPNNKRRHTKQLMNDEKKIASASKSSIDHARHLETNEHCTSSQSTASKNNQVIANSHNIKAGVATDELVDKVVNDKGRQQPPKSKKSLSPLSSLFKKCRR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01365 714 Gene3D - 224 445 - -
Trre9g01365 714 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 23 533 - -
Trre9g01365 714 SUPERFAMILY Poly A polymerase C-terminal region-like 224 368 - -
Trre9g01365 714 Pfam Poly A polymerase head domain 93 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
Trre9g01365 714 MobiDBLite consensus disorder prediction 684 714 - -
Trre9g01365 714 MobiDBLite consensus disorder prediction 587 608 - -
Trre9g01365 714 Gene3D Beta Polymerase, domain 2 59 221 IPR043519 -
Trre9g01365 714 CDD NT_ClassII-CCAase 79 220 IPR002646 GO:0003723|GO:0006396|GO:0016779
Trre9g01365 714 MobiDBLite consensus disorder prediction 587 628 - -
Trre9g01365 714 Pfam Probable RNA and SrmB- binding site of polymerase A 252 314 IPR032828 -
Trre9g01365 714 SUPERFAMILY Nucleotidyltransferase 67 220 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01365 Trre-Chr9 11619931 11626806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01365 - - tpra:123905643 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01365 9 11619931 11626806 Trre9g01365 9 11619931 11626806 ECH