Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01360 ATGGCATCCGGTGAAGGTGATACTGGTGGAACGATGGAGATTCGTGCAGAAGATTCTTCTAGAACTGAGGAGAATTTGTCTGATTCTGATATGAATCGTGAAAGCCATGATGGAAGTAATATAAATGTTGTATTGGAAAACGGCGTCTCTGATGGCAATGAAGGTTCGGGCGATACTTATGATCAGCTTTTGCAAATGGTTGTTGACTTGAGATTTCAGAATGAGTTTTTGAAGTCACAGTTTGAAGGGTTTAGTAATGTTAACAGTGTAAGTAGTGAGTCTAGTTTACAGAAAGAAGTTGGTGGCACGGAAGACCGGGAATCTGACATTGTCAAAGAACTTCAGGAAAAGATAGAATCATTGAATAAAGAATTTCTGATAGAAAAACAAACAAGAATTGCTTCTGAAGAAGCTCTAAAGCACCTTCAAATTGTGTACTCAGATGCAGAAGAAAAAGCCAAAGATCTCGCTGAACAGCTTGTAGAAGCTCAAAATAAGTTGGAACATGAAATAAAAGAACGTGATGAGAAGTACTCTGAACTCGACGCCAAGTTAAATAGGCTTCACAAAAGGGCAAAACAACGCATTCAAGAGGTTCAAAAGGAAAAAGATGACCTTGAGGCACGATTTAACGAGGTAAATGAATCTGCTGAGCGAGCAACATCCCAACAGTCAGCATTGCAACAAGAGTTAGAGCGCACAAGGAAACAAGCAAATGAGGCATTGAAAGCCATGGATAGTGATAGGCAACAATTAAGAAGTGCAAACAACAAACTTCGAGATACCATTGAGGATTTACGGCGTTCATTGGAACCTAAAGAAAATGCTCTTGAGGCATTGCAATTGTCAGTAGCAGAAAAGGAACAGATGCTGGAAAATATGAGAGGATTGCTTCAAGCTGCTGACGAAAAAAGGCAAGCTTCACTAGCTGAGCTCTCTGCTAAACATCAAAAGAATATAGAGAGTTTGGAGGCTCAACTCAATGATGCTCTGTCTGATAGAAGTAAGGCAGATGAATCCATTTCTTCACTGCAGGTTCTAGTTGCAGAGAAAGAATCTAGAATTGCAGAGATGGAGGCAGCATCAACTGGGGAAGCAGCACGACTCAGAGCAGCCATGGAAAGTGTGAAGGGGGAGATTTCTCACCTAAAACAGGAACATGAAAAAGAAAGGGAAAGCTGGGAGACCGCATCTCATGCTCTTAAAGCAAAGCTCCAAATTGCTGAGAGCAACTGTATACGTGCAGAAGTTGAAATAGCAAAAATAAGAAGTCAGCTTGAGTCAGAGGTATCTGCACAAGCGAAGATCCTCGGTATGCGAGAAGCTGAATTGTTGGCTGCCAAAGAACAGAAAAGCAGTCTTGAGAGGGAATTTTCTTCATACAAGGCTCGTGCACATGCACTTCTTCAAAAGAAGGATGCAGACCTGGTTGCAGCTAAAGACTCTGAACAACTCAAAGCTCTTGAGGAGGCTCTTAAAGAGGCTGAAAATGAAGTATCATCAATAACAGAAGAAAGGGATAGAGCTCTTCAAGATCTTCAATCTGCCATGGCTAATAATGAGAAAGAACTTGCAGAAAGTGTGTGTGGAGCACTCACAGCCTCTCATTTTGTGAATTTCAGAGACACTGCTCTTGAAAATGCCAAGCAACAGATAAGGAGCTTAGAAACAAAGCTCGACTTAGTTAGTGCTCAACACCTAAGAGAGAAAGAGGAATGGGGGCTTAGCCTTCAAAATGTAGAAGAAACATGGAGAATCAGATGCGAGGCAATGAAAGCCGAAAATGAAGCAGCTGCCGCAGAAGATATGAAAAAGGAATTGGAAGAGCTCAAACGGAGATGTAAAAAATTGAAGGAAGAACATGCTTCATTTCACGATCTTGCTGATAGAATGATCGAGGATAAAGACAATGAAATATCCAGACTTTTAGATGAAAATAAGAATCTTCGCCAGTCTCTTCAATCAAGACCACCCGCCAGTCAAAATGATAATTACAACACAGCCTTGCATAAATTGGATCCAAATAATTTAAGTCCCTCAGATGCTGAACATCAAATTCTGATTTTGGCTAGACAACAAGCCCAAAGAGAGGAAGAGCTAGCTCAGTCACAGCGTCATATTTTAGCTCTTCAAGAAGAAATTGAGGAGCTTGAACATGAAAATCGTCTCCACAGCCAACAGGAGGCAATGTTAAAGTCTGAACTTCGCAACATGGAAAGATCAAAGAAAAGGGAAGGTGTAGATATGACATATTTAAAAAATATTATCTTAAAGCTTCTTGAGACAGGTGAAGTCGAAGTATTACTACCAGTTATCGGGATGCTGCTTCAGTTTAGTCCAGAGGAGATGCAGAAATGTCAACAGACATATCAAAACTCGAAAGATGTTCCACCAAGTCCTGCAAGTGACACATCGGGATCTGGCCTCTCTCTTTTCTCAAGATTCTCATTTTCTTAA 2457 0.4082 MASGEGDTGGTMEIRAEDSSRTEENLSDSDMNRESHDGSNINVVLENGVSDGNEGSGDTYDQLLQMVVDLRFQNEFLKSQFEGFSNVNSVSSESSLQKEVGGTEDRESDIVKELQEKIESLNKEFLIEKQTRIASEEALKHLQIVYSDAEEKAKDLAEQLVEAQNKLEHEIKERDEKYSELDAKLNRLHKRAKQRIQEVQKEKDDLEARFNEVNESAERATSQQSALQQELERTRKQANEALKAMDSDRQQLRSANNKLRDTIEDLRRSLEPKENALEALQLSVAEKEQMLENMRGLLQAADEKRQASLAELSAKHQKNIESLEAQLNDALSDRSKADESISSLQVLVAEKESRIAEMEAASTGEAARLRAAMESVKGEISHLKQEHEKERESWETASHALKAKLQIAESNCIRAEVEIAKIRSQLESEVSAQAKILGMREAELLAAKEQKSSLEREFSSYKARAHALLQKKDADLVAAKDSEQLKALEEALKEAENEVSSITEERDRALQDLQSAMANNEKELAESVCGALTASHFVNFRDTALENAKQQIRSLETKLDLVSAQHLREKEEWGLSLQNVEETWRIRCEAMKAENEAAAAEDMKKELEELKRRCKKLKEEHASFHDLADRMIEDKDNEISRLLDENKNLRQSLQSRPPASQNDNYNTALHKLDPNNLSPSDAEHQILILARQQAQREEELAQSQRHILALQEEIEELEHENRLHSQQEAMLKSELRNMERSKKREGVDMTYLKNIILKLLETGEVEVLLPVIGMLLQFSPEEMQKCQQTYQNSKDVPPSPASDTSGSGLSLFSRFSFS 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01360 818 Coils Coil 366 425 - -
Trre9g01360 818 Coils Coil 632 652 - -
Trre9g01360 818 SMART 1grip 745 789 IPR000237 -
Trre9g01360 818 Pfam GRIP domain 746 785 IPR000237 -
Trre9g01360 818 Coils Coil 104 131 - -
Trre9g01360 818 Coils Coil 545 565 - -
Trre9g01360 818 MobiDBLite consensus disorder prediction 11 35 - -
Trre9g01360 818 MobiDBLite consensus disorder prediction 1 56 - -
Trre9g01360 818 MobiDBLite consensus disorder prediction 36 56 - -
Trre9g01360 818 Gene3D - 165 319 - -
Trre9g01360 818 Coils Coil 590 627 - -
Trre9g01360 818 Coils Coil 139 361 - -
Trre9g01360 818 Coils Coil 478 526 - -
Trre9g01360 818 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 68 802 - -
Trre9g01360 818 Coils Coil 444 464 - -
Trre9g01360 818 ProSiteProfiles GRIP domain profile. 742 789 IPR000237 -
Trre9g01360 818 MobiDBLite consensus disorder prediction 786 818 - -
Trre9g01360 818 Coils Coil 693 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01360 Trre-Chr9 11579935 11589402 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01360 - - tpra:123905639 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01360 9 11579935 11589402 Trre9g01360 9 11579935 11589402 ECH