Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01263 ATGATGTTAGACGGAACCGAAGACGAAGAGAAATTCCTCGCCGCCGGAATCGCCGGCCTTCAACAGAATTCATTCTACATGCACCGTGCATTGGATTCGAATAATCTCAGAGATGCTTTGAAATATTCCGCTCAGATGCTTTCTGAGCTTAGGACTTCCAAGCTTTCTCCTCATAAATACTACGAACTCTACATGCGTGCCTTTGATCAATTGAGGAAGCTGGAGATGTTCTTTGAGGAAGAGACTCGTCGTGGTTGCTCCATTATTGATCTTTATGAGCTTGTTCAGCATGCCGGCAACATTTTGCCTCGATTGTATCTCCTATGTACAGTAGGATCTGTATACATCAAATCAAAGGAAGCTCCTGCTAAGGATGTTCTTAAGGATCTTGTGGAGATGTGTCGTGGCATTCAGAACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAAGGATAAATTGCCTGATATTGGTTCCGAGTACGAAGGGGATGCGGATACTGTATCAGATGCTGTAGAATTTGTACTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGGATGCAACATCAGGGGCCGTCCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGTGAGCTGCGAGATCTTGTTGGGAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTTGATATGTACAAAGATGTTGTGCTACCTAGAGTACTGGAGCAGGTCGTGAATTGCAAAGATGAGTTGGCCCAATTCTACTTGATGGATTGCATAATTCAAGTCTTCCCGGATGAGTATCACTTGCAAACACTTGATGTGTTGTTGGGTGCTTACCCTCAACTTCAGCCGTCTGTTGATATCAAGACAGTACTGTCCCAGTTAATGGAAAGGCTTTCAAATTATGCTGCTTCAAGTGCTGAGGTGTTGCCTGAGTTTTTGCAGGTGGAAGCATTTTCCAAATTAAGCAATGCAATCGGCAAGGTGATAGAGGCACAGCCTGACATGGCCACTGCTGGAGTTGTAACTTTATATTCATCTCTTCTTACCTTCACTCTTCATGTCCACCCCGATCGACTAGATTATGCTGATCAAGTCTTGGGAGCATGTGTGAAAAATCTCTCTGGCAAAGGTAAAATTGAGGACAAGAAGGCAACGAAGCAGATTGTTGCTTTATTAAGTGCTCCACTAGAGAAATACAATGACATTATGACTGCCTTGAAGCTTTCAAACTATCCTCGTGTAATGGAATTCCTTGACATTCCAACTAATAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAATGCAACACGCATTTCTACATCAGACAAGGTGGAAGCGTTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGTGACTCCTGACGATGAGCTGGATGAAGATGATTTCAAAGAGGAGCAAAATTCTGTTGCACGTCTGATCCAGATGCTTTATAATGAGGATCCAGAAGAGATGTTTAAGATCATTGAAACTGTGAGGAAGCACATACTGACTGGAGGACCAAAGCGTCTGCCTTTCACTGTTCCACCTCTTATGTTTTCTTCTTTAAAGTTGGTCAGGCAGTTGCAAGGTCAAGGTCAAGAAGAAAAAGAAAATCCTTTTGGGGATGATTCATCAACATCACCAAAGAAAATCTTTCAGCTTTTAAATCAGACCATCGAGACTCTGTCAGGTGTCCTGGCACCAGAGTTAGCACTGCAGTTGTGCTTGCAATGTGCTGAGGCTGCAAATGACTGTGAGTTGGAACCAGTTGCATATGAATTTTTTACACAAGCTTATATTCTATATGAAGAAGAAATTTCTGATTCCAGAGCACAGGTCACAGCTATCCATTTGATAATAGGAACTCTTCAAAGAATGCATGTCTTTGGTGTTGAGAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCAGCGAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCATGCTCACATTTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGAGTCCTATTATGCCTTAAGCGGGCTTTAAGGATTGCAAATGCTGCGCAACAAATGGCAAATGCTGCACGGGGTAACACCGGATCAGTAATGCTTTTCATTGAGATTTTGAACAAGTATCTTTACTTTTTTGAGAAGGGGAACCCACAAGTCACAGTTGCTGCTATCCAGGGCCTGATTGAGTTAATTATGAATGAAATGCAAAGTGACACTGCGACTCAAGATCCATCTGCAGATGCTTTCTTAGCCACTACTATGCGCTATATACAGTTCCAAAAACAAAAGGGTGGTACAGTTGGTGAGAAATATGAACCGATCAAGGTTTGA 2385 0.4231 MMLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQNPVRGLFLRSYLSQVSKDKLPDIGSEYEGDADTVSDAVEFVLQNFTEMNKLWVRMQHQGPSREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDVVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMATAGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVKNLSGKGKIEDKKATKQIVALLSAPLEKYNDIMTALKLSNYPRVMEFLDIPTNKVMATVIIQSIMKNATRISTSDKVEALFELIKGLIKDSDVTPDDELDEDDFKEEQNSVARLIQMLYNEDPEEMFKIIETVRKHILTGGPKRLPFTVPPLMFSSLKLVRQLQGQGQEEKENPFGDDSSTSPKKIFQLLNQTIETLSGVLAPELALQLCLQCAEAANDCELEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMANAARGNTGSVMLFIEILNKYLYFFEKGNPQVTVAAIQGLIELIMNEMQSDTATQDPSADAFLATTMRYIQFQKQKGGTVGEKYEPIKV 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01263 794 PIRSF Retromer_Vps35 2 794 IPR005378 GO:0015031|GO:0030906|GO:0042147
Trre9g01263 794 FunFam Vacuolar protein sorting-associated protein 35 466 779 - -
Trre9g01263 794 Pfam Vacuolar protein sorting-associated protein 35 13 751 IPR005378 GO:0015031|GO:0030906|GO:0042147
Trre9g01263 794 Gene3D - 465 779 IPR042491 -
Trre9g01263 794 PANTHER VACUOLAR SORTING PROTEIN 35 6 794 IPR005378 GO:0015031|GO:0030906|GO:0042147
Trre9g01263 794 SUPERFAMILY ARM repeat 220 756 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01263 Trre-Chr9 10686156 10694899 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01263 K18468 - gmx:100811902 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01263 9 10686156 10694899 Trre9g01263 9 10686156 10694899 ECH