Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01260 ATGGCTTCCACATCCACCAATAATATCTCTCTATCTCCATCCCTTAAACAACAACAACCCATTCACCTCTCTTCCCTTCTAAATCCTAAATTTCTCCATCCCCACTCCTTATTCTGTCACCCCACCAACCATTTTCCAAAATTTTCATCTCTTTCTACACCTCTTAGGTCACCAATATGTGCTAGTTCTTCTCAACTAATGGACCCCTTTTCAACAAAAATTGAACCTGGAGTTCCCACCATTGTCAACGTTGATTTGGGTAATCGGAGCTATCCTATTTATATCGGATCCGGGTTGCTCAATAAACCTGAGCTTCTTCAAAGGCATGTCCATGGAAAGAAGGTTCTTATTGTCACTAACACTACGGTTGCACCTTTGTATCTAGACAAGGTTGTTGATGCTTTAACAAGTGGGAACCCAAATGTTTCTGTTGAGAGTGTAATTTTACCGGATGGTGAGCAGTACAAGGATATGGTTACTCTTATGAAAGTGTTTGACAAGGCCATTGAGTCGCGATTGGACCGACGTTGTACGTTTGTTGCACTTGGAGGTGGTGTGATTGGTGACATGTGTGGCTTTGCTGCCGCTTCGTTCCTACGTGGTGTTAATTTTATTCAGATTCCAACCACTGTTATGGCACAGGTTGATTCTTCAGTTGGTGGCAAAACTGGGATAAACCATCCCCTTGGAAAGAACCTGATCGGTGCTTTTTACCAACCTCAATGTGTGCTTATCGACACAGACACATTAGATACATTACCAGAGAGGGAACTGGCATCAGGGTTTGCAGAGGTTATTAAGTACGGGCTCATTAGGGATACAGAATTTTTTGAGTGGCAAGAGAAAAATATGCAGGCATTAATGGCTAGAGACCCTAATGCACTGGCATATGCTATAAAACGATCATGTGAAAACAAGGCGGAGGTTGTGTCCTTGGATGAGAGAGAAGGTGGAGTTAGGGCAACATTGAATTTGGGTCATACATTTGGTCATGCAATAGAAACTAGTGTTGGCTATGGCCATTGGCTTCATGGAGAGGCTGTTGCAGCTGGCACGGTAATGGCTGTTGACATGTCATATCGCCTAGGTTGGATTGACGATTCTATTGTGAAGCGAGTTAGTGACATTTTGAAACAGGCCAAGTTACCTATTGTGCCTCCTGAAATCATGACCGTGGACATGTTTAAATCCGTCATGGCAGTTGATAAGAAGGTAGCAGATGGATTGCTGAGACTTATCCTTCTAAAGGGTCCTCTAGGAAATTGCGTTTTCACAGGGGATTATGACAGGAAGGCTCTTGATGACACGCTTCGTGCATTCTGTAAATCTTGA 1332 0.4324 MASTSTNNISLSPSLKQQQPIHLSSLLNPKFLHPHSLFCHPTNHFPKFSSLSTPLRSPICASSSQLMDPFSTKIEPGVPTIVNVDLGNRSYPIYIGSGLLNKPELLQRHVHGKKVLIVTNTTVAPLYLDKVVDALTSGNPNVSVESVILPDGEQYKDMVTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLDTLPERELASGFAEVIKYGLIRDTEFFEWQEKNMQALMARDPNALAYAIKRSCENKAEVVSLDEREGGVRATLNLGHTFGHAIETSVGYGHWLHGEAVAAGTVMAVDMSYRLGWIDDSIVKRVSDILKQAKLPIVPPEIMTVDMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLRAFCKS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01260 443 Hamap 3-dehydroquinate synthase [aroB]. 79 441 IPR016037 GO:0003856|GO:0005737|GO:0009073
Trre9g01260 443 Gene3D - 68 252 - -
Trre9g01260 443 FunFam 3-dehydroquinate synthase 79 252 - -
Trre9g01260 443 FunFam 3-dehydroquinate synthase 253 442 - -
Trre9g01260 443 Pfam 3-dehydroquinate synthase 147 405 IPR030960 -
Trre9g01260 443 NCBIfam 3-dehydroquinate synthase 91 431 IPR016037 GO:0003856|GO:0005737|GO:0009073
Trre9g01260 443 CDD DHQS 90 437 - -
Trre9g01260 443 SUPERFAMILY Dehydroquinate synthase-like 82 436 - -
Trre9g01260 443 PANTHER 3-DEHYDROQUINATE SYNTHASE 81 438 - -
Trre9g01260 443 Gene3D - 253 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01260 Trre-Chr9 10664442 10667875 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01260 K01735 - gmx:100806628 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01260 9 10664442 10667875 Trre9g01260 9 10664442 10667875 ECH