Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01188 ATGGCAGATTCATCATCCCCAACACCAACACCGTCAACTAACGGCGACACCACTCGCAAAGTAGCATTGATCACCGGAATCACAGGCCAAGACGGATCATACCTAACGGAATTTCTTCTCAACAAAGGCTACGAAGTTCACGGCCTAATTCGCCGTTCATCCAATTTCAACACTCAACGAATCGATCACATCTATGTCGATCCACACAACGCTCACAAAGCTCGTATGAAACTTCACTACGCCGATCTCTCCGACGCTTCTTCTCTCCGTCGTTGGCTCGATGTGATTCTTCCCGACGAAGTTTACAATCTCGCCGCTCAATCTCATGTTGCTGTTTCTTTCGAGATCCCTGATTATACCGCTGATGTTGTTGCTACTGGTGCACTCCGTCTTCTTGAAGCGGTTAGATCTCACATCGATGCATCTGGTAGATCTCACATTCGATACTATCAAGCTGGATCTTCTGAAATGTTTGGATCAACTCCACCGCCACAATCTGAAACGACGCCGTTTCATCCTCGTTCACCTTACGCAGCTTCGAAAGTCGCTGCGCATTGGTACACTGTGAATTACCGTGAAGCGTATGGAATTTTCGCTTGTAACGGAATTCTGTTCAATCATGAATCACCTCGCCGTGGTGAGAATTTTGTAACGAGAAAAATTACTCGTGCTGTTGGAAGAATCAAGATCGGGTTACAGAGTAAGCTGTTTCTTGGAAACCTACAAGCTTCAAGAGATTGGGGATTTGCTGGTGATTATGTTGAAGCGATGTGGTTGATGCTTCAACAAGAGAAAGCTGATGATTATGTTGTAGCGACGGAAGATTCGCATACGGTTGAAGAGTTTCTAGAAGTTGCTTTTGGTTATGTTGGATTGAATTGGAAGGATCATGTTGTTATTGATAAGAGGTATTTTCGTCCAACTGAAGTTGATAATCTGAAAGGTGATGCTAGTAAAGCTAAGAAAATTCTTGGATGGAAACCTAAGGTTAGTTTTGAAGAGCTTGTTAGAATGATGGTTGATAATGATGTTGAAATGGCTAAGAAGGAGAAAGTTCTTGTTGATGCTGGTTACATTGATGCTCAACAACAACCTTGA 1098 0.4335 MADSSSPTPTPSTNGDTTRKVALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRIDHIYVDPHNAHKARMKLHYADLSDASSLRRWLDVILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIDASGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKVAAHWYTVNYREAYGIFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPTEVDNLKGDASKAKKILGWKPKVSFEELVRMMVDNDVEMAKKEKVLVDAGYIDAQQQP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01188 365 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 15 355 IPR006368 GO:0008446|GO:0019673
Trre9g01188 365 FunFam GDP-mannose 4,6-dehydratase 23 221 - -
Trre9g01188 365 Pfam GDP-mannose 4,6 dehydratase 23 339 IPR016040 -
Trre9g01188 365 CDD GDP_MD_SDR_e 21 345 - -
Trre9g01188 365 Gene3D - 23 329 - -
Trre9g01188 365 Hamap GDP-mannose 4,6-dehydratase [gmd]. 20 349 IPR006368 GO:0008446|GO:0019673
Trre9g01188 365 NCBIfam GDP-mannose 4,6-dehydratase 20 346 IPR006368 GO:0008446|GO:0019673
Trre9g01188 365 Gene3D - 213 339 - -
Trre9g01188 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 345 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01188 Trre-Chr9 9746068 9747165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01188 11 205 Miscellaneous Gene Families AT4G12250 29.064 7.50e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01188 K01711 - gmx:100797782 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01188 9 9746068 9747165 Trre9g01188 9 9746068 9747165 ECH