Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01126 ATGAAAAATCTAAATTTTCTTCTATTTTCACTCATCATAGTTTCAACAACAACACTACTAAAATTTTCAGAATCAAAAACCCATTGGGAAGACATAAAAGCTCTAAAACAATTCAAACAAAACATAAACCCTGATTCAGTGAAACCAGGTTCATGCTTGAACACATGGAACTTCAACTTCGACCCATGTGATAATCTCTTTAGCGACAAATTTACCTGCGGATTCAGATGTGACATCACCGTTTCAAAACTGAGTCGACTCACCGAACTCACTCTCGACCAAGCTGGTTACACCGGTTCACTCACTTCCATCAATCTTCCTTACCTCGAAATTCTCGAAATTTCAAACAACTACTTCACAGGTTCAATTCCCGATTCTCTTTCAAACTTAACTCGTCTGAGTCGACTCAGTCTATCATTTAACTCGTTCACCGGAGAAATACCTTCTTCCATTGGATCTTCACTTTCAAATCTCCAAGAGCTTTTTCTTAACAACAACAATCTTCAAGGAACGATTCCTTCAAGTTTCAGCAATCTTAAAAGCTTAACAAGACTCGAACTTCAAGAAAACAACCTCACCGGAAAATTTCCCGATTTGGGTTCTCTGCAAAATCTCTACTACATAGATCTCAGTGATAACAAATTCTCCGGTGACCCATTTGAATTTCCGGTGACATTACCGGTTTCTTTAGTTCAGATTTCAATGAGGAACAATAATTTAACCGGTTTAACTTCCGAAACCTTCAAGAATCTGAATTATTTGCAGGTTGTTGATTTCAGCTCAAACAAAATCAATGGTTATGTTCCTTCTATATTCTTTCAGCTTCCATCGTTGCAACAGTTAACACTTTCATTCAACGAGTTTTCTTCAATTGAAGCTCTTTCGTTTGGAACAGAATCACTTCAAAACGAGCTTATAGCAGTTGATTTAAGCAATAATCAGCTTCAAGGTTTTTTACCATCTTTTTTAGCTTTTTTACCTAAGCTATCTTCTTTGTCTTTGGAGAATAACCGGTTCACTGGTTTAATACCGGTTCAGTTTGCATTAAAAACGGTTTTTCCAGAAACTGGTATTGCTCCATTTGGAAGGCTTTTATTAGGAGGAAATTATTTGATTGGTGGAATACCTCGTCCTTTGCTTGTTCTTAAACAAGATTCTGCTAATGTGAGTTTAGTTGATAATTGTTTGTTTAGGTGTCCTCATGTTTTCTTTTTTTGTCAAGGTGGAACACAGAAATCATCTTCTGAATGTAGTAGTGTAATTATTCCTTAA 1272 0.3616 MKNLNFLLFSLIIVSTTTLLKFSESKTHWEDIKALKQFKQNINPDSVKPGSCLNTWNFNFDPCDNLFSDKFTCGFRCDITVSKLSRLTELTLDQAGYTGSLTSINLPYLEILEISNNYFTGSIPDSLSNLTRLSRLSLSFNSFTGEIPSSIGSSLSNLQELFLNNNNLQGTIPSSFSNLKSLTRLELQENNLTGKFPDLGSLQNLYYIDLSDNKFSGDPFEFPVTLPVSLVQISMRNNNLTGLTSETFKNLNYLQVVDFSSNKINGYVPSIFFQLPSLQQLTLSFNEFSSIEALSFGTESLQNELIAVDLSNNQLQGFLPSFLAFLPKLSSLSLENNRFTGLIPVQFALKTVFPETGIAPFGRLLLGGNYLIGGIPRPLLVLKQDSANVSLVDNCLFRCPHVFFFCQGGTQKSSSECSSVIIP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01126 423 ProSiteProfiles Leucine-rich repeat profile. 277 298 IPR001611 GO:0005515
Trre9g01126 423 Gene3D Ribonuclease Inhibitor 302 395 IPR032675 -
Trre9g01126 423 Gene3D Ribonuclease Inhibitor 30 154 IPR032675 -
Trre9g01126 423 FunFam Nuclear pore complex protein NUP107 28 198 - -
Trre9g01126 423 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Trre9g01126 423 Pfam Leucine rich repeat 230 287 IPR001611 GO:0005515
Trre9g01126 423 Gene3D Ribonuclease Inhibitor 223 301 IPR032675 -
Trre9g01126 423 SMART LRR_typ_2 326 349 IPR003591 -
Trre9g01126 423 SMART LRR_typ_2 130 154 IPR003591 -
Trre9g01126 423 SMART LRR_typ_2 275 298 IPR003591 -
Trre9g01126 423 SMART LRR_typ_2 155 178 IPR003591 -
Trre9g01126 423 SMART LRR_typ_2 179 202 IPR003591 -
Trre9g01126 423 SMART LRR_typ_2 228 250 IPR003591 -
Trre9g01126 423 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Trre9g01126 423 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 7 418 - -
Trre9g01126 423 SUPERFAMILY L domain-like 63 349 - -
Trre9g01126 423 Gene3D Ribonuclease Inhibitor 155 222 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01126 Trre-Chr9 9037057 9038328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01126 84 419 Receptor kinase-like Gene Family AT3G11080 28.933 4.26e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01126 - - gmx:100811366 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01126 9 9037057 9038328 Trre9g01126 9 9037057 9038328 ECH