Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01122 ATGACAAGTTCTTCAGCTGCTTCTCGCAAGAATCTCAGTAAGATCGCCTGCAATAGGCTCCAGAAAGAACTCGTCGAGTGGCAGGTTAATCCCCCAACTGGTTTCAAACACAAAGTCACCGACAATCTCCAAAGGTGGGTTATTGAAGTGACTGGAGCTCCTGGAACACTTTACACCAATGAAACCTACCAGCTTCAGGTTGATTTTCCTGAGAATTATCCAATGGAAGCTCCACAGGTGATATTCTTGCATCCGGCTCCATTGCATCCTCATATCTACAGCAATGGCCATATTTGTTTAGATATATTATATGATTCATGGTCTCCTGCAATGACTGTTAGTTCTATCTGCATTAGCATACTTTCAATGCTTTCAAGCTCAACTGCAAAGCAACGCCCTGAAGATAATGATCGCTATGTAAAGAACTGCAGAAACGGAAGATCACCCAAGGAGACAAGGTGGTGGTTCCATGATGACAAAGTATGA 486 0.4321 MTSSSAASRKNLSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVIEVTGAPGTLYTNETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01122 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Trre9g01122 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Trre9g01122 161 SUPERFAMILY UBC-like 5 143 IPR016135 -
Trre9g01122 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Trre9g01122 161 SMART ubc_7 18 161 - -
Trre9g01122 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 138 - -
Trre9g01122 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Trre9g01122 161 CDD UBCc 17 117 IPR000608 -
Trre9g01122 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01122 Trre-Chr9 9016032 9019570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01122 1 112 Miscellaneous Gene Families AT2G33770 26.087 6.36e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01122 K10688 - gmx:100785024 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01122 9 9016032 9019570 Trre9g01122 9 9016032 9019570 ECH