Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01119 ATGACGATGGCTGCTTCGGCTTTATCTTCTATAATCAACCAACCTCACATTAAGCTTCATTCTCCATCTTGTTTCACCACTCTCAGATTCTTCAAACATATTAACAAACCACTCTCCTCAACTTCATCTCCACGTCCTCTTCATCACATCACCGCTTCTAGAACCTTCTCCATTTCCAACAAATCATCGGAACAACCCTCTCTTCGCCATTTCGTTGCCAGAGCTTCTTTAACCGCTTCCCAACTTCAACCCCATGTTGTGGCGGATACTGAAGTTTCTTCAACTGGCCGAATATATCACGAGACCTATGGATGTCAAATGAACGTTAATGATATGGAGATTGTCCTGTCTATAATGAAAAAGGCAGGCTATAATGAAATTGTGACTGTTCCTGAGAATGCAGAAATAATATTCATCAACACTTGTGCCATAAGAGATAATGCAGAAATGAAAGTGTGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGAATTGGAAGGCCAATATTGCTAGTGGAAGGTCGCAATCCCTGCGCCCTCCTAAAGTAGTTGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAAAAGATACTTGATGCAGACAAAATGGTTGATGTAGTATGCGGGCCTGACGCTTATAGGGATTTGCCAAGATTATTGGAAGAGGTTGAGTATGGCCAGAAAGGGATTAACACTCTTCTTTCGCTTGAGGAGACTTATGCTGATATTAATCCAGTTCGGATCTCCCAGAATTCCATTAGTGCTTTTGTTTCGATTATGAGGGGCTGCAACAATATGTGTTCATTTTGTATTGTACCTTTCACTAGAGGCAGAGAGCGATCGCGTCCTGTTGATTCCATTGTGAGAGAGGTGGCAGAGCTTTGGAAAGAGGGTGTGAAAGAAGTAACACTTCTTGGCCAGAATGTGAACAGCTACAATGATGCATCTGTGATTGAAAAAGAAGCAGAACCAGGGTCCAATTGGAAACTTAGTGAAGGGTTTTCCAGTATATCGAAGGTCAGAACCACAGGCTTAAGGTTTGCTGATCTATTGGATCGACTCTCATTAGAATTTCCTGAGATGCGTTTCAGATTCACGTCTCCACACCCTAAAGATTTTCCAGATGAACTTCTTTATCTTATGCGCGAAAGGAATAATATATGCAAATTGATACATTTACCCGCACAATCAGGAAGTAGCACAATGCTTGAGAGAATGAGGCGAGGATATACTCGAGAGGCTTACTTGAGTCTTGTGCAAAAAATTCGAAGTATTATTCCAGATGTGGCCCTGAGCAGTGATTTCATTTGCGGATTTTGTGGAGAAACAGAGGAGGATCATTCTGACACATTGACTCTTGTAAAAGAAGTTGGTTATGATATGGCATACATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAACTATGACGATGATGTTCCCGAGGAAACTAAGCAGAGGAGGCTAACTGAACTTATTGAGACTTTCCGCGAGAGCACAGGAAAATGTTACGACGAGCAGGTTGGAACTACACAGCTTGTCTTAGTTGAAGGACCGAACAAAAGAGCTCCAGATACTGAGCTCATAGGCAAGAGCGACAAGGGCCATCGGGTAATATTTGTCAATCTACCAATCTCAGACAGGGAAGATGTTAATGCAAAGAGAAATCCTGTGGTTGGCGATTATGTTGAAGTTCAGATAACAAAATCTTCAAGGGCATCACTCTTCGGCGAAGCACTTGCTATTACAAAATTGAGTTCATTTTATAATAATCTGGAAAGAGAAGCTGTTGCATGCAGCATGTAA 1815 0.4176 MTMAASALSSIINQPHIKLHSPSCFTTLRFFKHINKPLSSTSSPRPLHHITASRTFSISNKSSEQPSLRHFVARASLTASQLQPHVVADTEVSSTGRIYHETYGCQMNVNDMEIVLSIMKKAGYNEIVTVPENAEIIFINTCAIRDNAEMKVWQRLNYFWFLKRNWKANIASGRSQSLRPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADINPVRISQNSISAFVSIMRGCNNMCSFCIVPFTRGRERSRPVDSIVREVAELWKEGVKEVTLLGQNVNSYNDASVIEKEAEPGSNWKLSEGFSSISKVRTTGLRFADLLDRLSLEFPEMRFRFTSPHPKDFPDELLYLMRERNNICKLIHLPAQSGSSTMLERMRRGYTREAYLSLVQKIRSIIPDVALSSDFICGFCGETEEDHSDTLTLVKEVGYDMAYMFAYSMREKTHAHRNYDDDVPEETKQRRLTELIETFRESTGKCYDEQVGTTQLVLVEGPNKRAPDTELIGKSDKGHRVIFVNLPISDREDVNAKRNPVVGDYVEVQITKSSRASLFGEALAITKLSSFYNNLEREAVACSM 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01119 604 Pfam Radical SAM superfamily 257 453 IPR007197 GO:0003824|GO:0051536
Trre9g01119 604 Gene3D - 97 239 IPR038135 -
Trre9g01119 604 SFLD B12-binding domain containing 174 477 - -
Trre9g01119 604 SUPERFAMILY Radical SAM enzymes 246 501 - -
Trre9g01119 604 Gene3D tm_1862 like domain 251 510 IPR023404 -
Trre9g01119 604 SMART MiaB 253 497 IPR006638 GO:0003824|GO:0051536
Trre9g01119 604 Pfam Uncharacterized protein family UPF0004 97 209 IPR013848 GO:0035596|GO:0051539
Trre9g01119 604 ProSitePatterns Methylthiotransferase radical SAM domain signature. 257 277 IPR020612 GO:0051539
Trre9g01119 604 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 97 579 IPR005839 GO:0006400|GO:0016740|GO:0051539
Trre9g01119 604 CDD Radical_SAM 257 480 - -
Trre9g01119 604 ProSiteProfiles Radical SAM core domain profile. 249 505 IPR007197 GO:0003824|GO:0051536
Trre9g01119 604 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 94 584 IPR006463 GO:0006400|GO:0016740|GO:0051539
Trre9g01119 604 FunFam CDK5 regulatory subunit-associated protein 1 96 239 - -
Trre9g01119 604 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 98 581 - -
Trre9g01119 604 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 50 596 - -
Trre9g01119 604 SFLD Radical SAM 94 588 IPR007197 GO:0003824|GO:0051536
Trre9g01119 604 Hamap tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 96 584 IPR006463 GO:0006400|GO:0016740|GO:0051539
Trre9g01119 604 ProSiteProfiles TRAM domain profile. 508 584 IPR002792 -
Trre9g01119 604 SFLD CDK5RAP1 94 588 - -
Trre9g01119 604 FunFam CDK5 regulatory subunit-associated protein 1 251 510 - -
Trre9g01119 604 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 96 225 IPR013848 GO:0035596|GO:0051539
Trre9g01119 604 Pfam TRAM domain 509 583 IPR002792 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01119 Trre-Chr9 8983602 8990332 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01119 - - lja:Lj2g3v1728760.1 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01119 9 8983602 8990332 Trre9g01119 9 8983602 8990332 ECH