Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01114 ATGCTTGGCGCCACAAGACGCGTAACGGCATTGATTCCTCGGAGTGTACAACAATTGCGTCAACTCCATGAAGATATCGAAGAGAGTATACATTTTTGCAAGAGCAAAGGCCAACACATTCTCACTAACCCTCGAATTCTGGACACTATAGTTCGAAAGTCAGCAATAAACCCCACAGACACGGTCCTTGAGATCGGTCCCGGCACCGGAAACCTCACTCTCAAGCTTCTAGAAGCTTCTCACCAAGTTATTGCCATCGAAATTGATCACCGCATGGTTAACATTCTTGAAAATCGTACTCTCAAACGCGGCCTCCGCAGTAAGCTAAGGTTGATAACAAAAGATGCATTGAGAACAGAGTTCCCACCGTTCGATCTCGTAGTCGCCAACATTCCATACGGTATATCTTCACCACTTGTGATTAAACTTTTATACGGTACAACACCATTTCGGAGCGCTACTCTTCTACTTCAGAAAGAGTTCGCTCGAAGATTACTGGCTAATCCCGGTGACTCTGAGTTTAACCGTTTAGCCGTTAATGTTAAGCTTCTAGCTGACGTGGAGTTTGTTATGGACGTTAGCAAAAGAGATTTTCTTCCGGCACCTAAAGTTGATTCCTCCGTCGTTATAATTAGACCAAAAGCTAAAATTCCCATAGTTGATCTCCATCAGTGGAGGGCTTTCACTAGGACTTGTTTTAATAACAAGAATAAGACACTTGGTGCTACGTTTAAGAGTAAGAGGAAAGTTTTTGAGCTGTTGAAATTTAACAATGCGTCTGGTTTAGTTCGACAACAAGATGATTTTTGTTCGCTTAAGGAAAAGATAATTGGAGTTCTTAGGGAGGGAGGGTTTGATGATAAAAGGCCTTCAAAACTTTCAATTGAAGAATTGTTGCATTTGATGTCTTTGTTTAATCAAGTTGGTGTATATTTTGATCACCATGGAGAGGTTGGGAATGAAGATGATAGGTTTGAGGTTGATGATGTTGATGACTAG 999 0.4154 MLGATRRVTALIPRSVQQLRQLHEDIEESIHFCKSKGQHILTNPRILDTIVRKSAINPTDTVLEIGPGTGNLTLKLLEASHQVIAIEIDHRMVNILENRTLKRGLRSKLRLITKDALRTEFPPFDLVVANIPYGISSPLVIKLLYGTTPFRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLLADVEFVMDVSKRDFLPAPKVDSSVVIIRPKAKIPIVDLHQWRAFTRTCFNNKNKTLGATFKSKRKVFELLKFNNASGLVRQQDDFCSLKEKIIGVLREGGFDDKRPSKLSIEELLHLMSLFNQVGVYFDHHGEVGNEDDRFEVDDVDD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01114 332 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 33 303 IPR011530 GO:0000179|GO:0006364
Trre9g01114 332 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 62 89 IPR020596 GO:0000154|GO:0000179|GO:0008649
Trre9g01114 332 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 32 309 IPR001737 -
Trre9g01114 332 Gene3D Vaccinia Virus protein VP39 32 216 IPR029063 -
Trre9g01114 332 Gene3D - 218 314 - -
Trre9g01114 332 FunFam rRNA adenine N(6)-methyltransferase 32 216 - -
Trre9g01114 332 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 308 IPR029063 -
Trre9g01114 332 PANTHER DIMETHYLADENOSINE TRANSFERASE 23 307 IPR001737 -
Trre9g01114 332 CDD AdoMet_MTases 61 144 - -
Trre9g01114 332 SMART rADcneu6 46 215 IPR020598 GO:0000154|GO:0000179|GO:0008649
Trre9g01114 332 Pfam Ribosomal RNA adenine dimethylase 34 258 IPR001737 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01114 Trre-Chr9 8951468 8953188 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01114 K14191 - gmx:100790908 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01114 9 8951468 8953188 Trre9g01114 9 8951468 8953188 ECH