Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01097 ATGTCAGGAGCTTCTGGGAATGGTTCTTTTAAGCAGAAACTCAGGGGTTCGTTGTCAAGAAAAGGTAGGCGTAGTAGTAAGGTCATGTCTGTTGAAATCGAGGATGTTCACGATGCTGAGGAGTTGAAAGCGGTTGAAGAGTTTCGTCAAGCTCTTGTATCGGAAGACCTCCTCCCTGCAAAACATGATGACTATCATATGATGCTTAGATTCCTAAAGGCTAGGAAATTTGAGATTGATAAATCAAAGCTGATGTGGTCTGATATGCTTAAATGGAGGAACGAATTTGGTGCTGACACTATTGGGGAGGAATTTGAATTCAAGGAAATTGATGAAGTAATCCAATATTATCCACATGGACATCATGGAGTAGACAAAGATGGACGACCTGTGTACATAGAAAGATTAGGACAAGTCGATGCAGCCAAGATGATGCAAGTCACAACCATGGATCGTTATATAAAATACCATGTAAAGGAGTTTGAGAGGACATTCGATGTAAAATTTGCTGCTTGTTCTATTGCTGCCAAGAAGCACATCGATCAAAGTACGACTATCCTGGATGTGGAGGGAGTGGGGCTTAAAAGCTTCAACAAACATGCTAGGGAACTTGTTACTCGCATTCAAAAGATCGACGGAGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATATTGTGGAACACTGTAAAATCCTTCCTTGATCCAAAGACCACAGCAAAAATCAATGTTCTTGGCAACAAGTATGATACTAAGTTGCTTGAAATAATTGATGCAAGTGAGTTACCTGAGTTTTTAGGAGGTACATGTAAATGTCCTAATGAAGGAGGATGCATGCGTTCGGATAAGGGTCCATGGAAAGATGCAGAAATAATGAAGATGGTTCAGAGTGGTGCTCACAAATGTGGAAGAAAATCTGAGTCTCAAGTTGAGGAAGAAGAGAAAGAGAAAACAATTCCTGAGACTCCTAAGACTCCCAAGTTGGAGGAAAATGTCACCTCAGCAGCTTCTCCAGTTTGCAAAGAGGTCCCTGCTACTAAATCTTCCAAGCATGAGGATGTAACCCCGCCGGTGGTTGATAAAAAACCTTCTCATAAAAAAGCTGACGAGAGTGAAACAATGGCAACATCAAAAGAGTTTATGACTGTCATGAAACGAATGGCTGAGTTGGAAGATAAAATGTCGAATATTAATCATCAGCCTGTTCTAATGCCGCCTGAGAAGGAGGAAATGCTAAATAATACTATCAGTCGAGCTGATTTATTGGAAAAAGAACTCTTGGCCACGAAGAAGGCTTTAGAAGATTCGCTGGCTAAACAAGAGGAGATTTCGGCTTATGTTGAGAATAAAAAGCAGAATAAAAGAACGTGTTTTTGTTTATGGTAA 1413 0.4048 MSGASGNGSFKQKLRGSLSRKGRRSSKVMSVEIEDVHDAEELKAVEEFRQALVSEDLLPAKHDDYHMMLRFLKARKFEIDKSKLMWSDMLKWRNEFGADTIGEEFEFKEIDEVIQYYPHGHHGVDKDGRPVYIERLGQVDAAKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVEGVGLKSFNKHARELVTRIQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDTKLLEIIDASELPEFLGGTCKCPNEGGCMRSDKGPWKDAEIMKMVQSGAHKCGRKSESQVEEEEKEKTIPETPKTPKLEENVTSAASPVCKEVPATKSSKHEDVTPPVVDKKPSHKKADESETMATSKEFMTVMKRMAELEDKMSNINHQPVLMPPEKEEMLNNTISRADLLEKELLATKKALEDSLAKQEEISAYVENKKQNKRTCFCLW 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01097 470 MobiDBLite consensus disorder prediction 313 333 - -
Trre9g01097 470 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 11 460 - -
Trre9g01097 470 SUPERFAMILY CRAL/TRIO domain 109 306 IPR036865 -
Trre9g01097 470 Gene3D - 23 96 - -
Trre9g01097 470 MobiDBLite consensus disorder prediction 306 383 - -
Trre9g01097 470 PRINTS Cellular retinaldehyde-binding protein signature 269 278 - -
Trre9g01097 470 PRINTS Cellular retinaldehyde-binding protein signature 236 255 - -
Trre9g01097 470 PRINTS Cellular retinaldehyde-binding protein signature 67 89 - -
Trre9g01097 470 Gene3D - 97 309 IPR036865 -
Trre9g01097 470 CDD SEC14 110 278 IPR001251 -
Trre9g01097 470 MobiDBLite consensus disorder prediction 1 24 - -
Trre9g01097 470 Pfam CRAL/TRIO domain 115 277 IPR001251 -
Trre9g01097 470 SMART sec14_4 109 280 IPR001251 -
Trre9g01097 470 MobiDBLite consensus disorder prediction 354 383 - -
Trre9g01097 470 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 109 283 IPR001251 -
Trre9g01097 470 Coils Coil 432 452 - -
Trre9g01097 470 SUPERFAMILY CRAL/TRIO N-terminal domain 38 104 IPR036273 -
Trre9g01097 470 SMART CRAL_TRIO_N_2 64 89 IPR011074 -
Trre9g01097 470 FunFam SEC14 cytosolic factor 97 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01097 Trre-Chr9 8806389 8810969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01097 70 274 Acyl Lipid Metabolism Gene Families AT5G47730 29.245 4.76e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01097 K26544 - gmx:100527533 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01097 9 8806389 8810969 Trre9g01097 9 8806389 8810969 ECH