Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01092 ATGAGAACCACCATGTTTGGTCGTTATGGTACCTCTTTCACAAACATTGGTTCAGCATCATCATGGTTCGAGCTATATGCTACCTTTTCCACTTTCATGATGCTTTTTAGAACTGCAATCAATGATATCATACCCTTAAAACTTAGAACTTTCATCATCTTAAAGCTCAAATCTTTCTTCACAAATTACCAACCCAATAATCAAGTTTCACTTCAAATCGATCAGTTTTGGGATGGATTTACCAACGATCTTTACTATGCAGCCAAAGAGTATCTTCCTACCAAAATCTCCAACACTTACAAATCCCTCAAAGTTGGAAAATTGCCCAAACATAACAACATAGTTTTAGCTTTTGATGGAAAACAAACAGTGGTTGATGTGTTTGAAAACATCAAGGTTAAATGGAACCTTGTTGAAAAACCAAACAATGATGAAGTTCTTGACAATCCCAAAAAAGAATATAAACATAAGTCATCAAAAGGTTATGAGGGGGATGGATTTGTGTTAAGTTTTGATGAGAAACATAGAGATAAAGTAATGGAAAAGTATCTTCCACATGTTTTAAGCACTTATGAAGCTTTAAAAGCTGGACATAAAAGTCTTAAGATTCATTCTATGCAATGTGGACCATGGAAACAAAGTGATTTAAATCACCCTGCTTCATTTGATTCACTTGCTTTAGAACCTGATTTGAAAAAAACTATTATTGATGATTTAGATCGGTTTTTGAGAAGGAAAAAGTTGTATCAAAAAGTTGGCAAGCCTTGGAAACGTGGTTACCTATTGTATGGTCCACCAGGAACAGGAAAATCAAGTCTTATTGCTGCTATGGCAAAGTATTTGAAATTTGATGTGTATGATTTGGATCTAAGTTCTGTGTATTCTAACCCAGACCTTATGAGAGCTATGAGAGAGACATCTAACAGATCTATCATTGTTTTTGAAGACATTGATTGCAATTCTGAGGTGCATGATCGATCAAAACCAGACAAGTTTGCAAATTTGGATTCAAATTCTGACTTAATAACGGCTAAGGTCGCAAAGAGCATGCCTAAAAGGTTTACTCTATCTGGTTTGCTTAACTATATGGATGGATTGTGGTCAAGTTGTGGAGAGGAAAGAATTTTGATATTTACTACGAACCATAAAGACAAAGTCGATCCAGCGTTGTTGCGCCCGGGACGTATGGACATGCATATTCACTTGTCTTTTCTTAAAGCCAAAGCATTCAGAGTTTTAGCTTCTAATTATTTGGATATTGAAGAACATCATCACCCTCTTTTGGAACAGATTGATGAGCTATTGGAAAAAGTTGAGGTCACCCCTGCTGTTGTAGCAGAGTATTTGTTGAGAAATGAGGATCCTGATGTTGCTCTTAAAGAAATTGTTAAATTTCTTCAAGAACTTGACATTCCAAAAGTTATTGTGGATGAAGAATGTAATGAGAAAGTTTAG 1455 0.354 MRTTMFGRYGTSFTNIGSASSWFELYATFSTFMMLFRTAINDIIPLKLRTFIILKLKSFFTNYQPNNQVSLQIDQFWDGFTNDLYYAAKEYLPTKISNTYKSLKVGKLPKHNNIVLAFDGKQTVVDVFENIKVKWNLVEKPNNDEVLDNPKKEYKHKSSKGYEGDGFVLSFDEKHRDKVMEKYLPHVLSTYEALKAGHKSLKIHSMQCGPWKQSDLNHPASFDSLALEPDLKKTIIDDLDRFLRRKKLYQKVGKPWKRGYLLYGPPGTGKSSLIAAMAKYLKFDVYDLDLSSVYSNPDLMRAMRETSNRSIIVFEDIDCNSEVHDRSKPDKFANLDSNSDLITAKVAKSMPKRFTLSGLLNYMDGLWSSCGEERILIFTTNHKDKVDPALLRPGRMDMHIHLSFLKAKAFRVLASNYLDIEEHHHPLLEQIDELLEKVEVTPAVVAEYLLRNEDPDVALKEIVKFLQELDIPKVIVDEECNEKV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01092 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 454 IPR027417 -
Trre9g01092 484 PANTHER BCS1 AAA-TYPE ATPASE 27 467 - -
Trre9g01092 484 SMART AAA_5 256 406 IPR003593 GO:0016887
Trre9g01092 484 CDD RecA-like_BCS1 235 402 - -
Trre9g01092 484 ProSitePatterns AAA-protein family signature. 374 392 IPR003960 GO:0005524|GO:0016887
Trre9g01092 484 Pfam Domain associated at C-terminal with AAA 44 138 IPR025753 -
Trre9g01092 484 Gene3D - 212 400 IPR027417 -
Trre9g01092 484 Pfam ATPase family associated with various cellular activities (AAA) 261 402 IPR003959 GO:0005524|GO:0016887
Trre9g01092 484 Gene3D - 401 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01092 Trre-Chr9 8720205 8722709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01092 230 402 Miscellaneous Gene Families AT2G29080 29.834 4.52e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01092 - K08900 gmx:100787726 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01092 9 8720205 8722709 Trre9g01092 9 8720205 8722709 ECH