Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01082 ATGAAACACTTTGCTTTGTTTTTCCTTTTGGCCATTTTGGTCCATCAAGAGTATTGTTCTTTCAATGTAGAAGCTTCTGGTGGTGATGGTTTTGTTAGAACAAGAGGCATCCATTTTATGTTAAATGGAAATCCTTACTATGCAAATGGATTTAATGCTTATTGGTTAATGTATACAGCTGCTGATCCATCCCAGAGATTCAAAGTTTCAAATGCTTTCCATGAAGCAACATCTCATGGTCTTACTGTTGCTAGAACTTGGGCTTTTAGTGATGGTGGTTATAGTCCTTTACAATATTCTCCTGGCTTCTATAATGAACAAATGTTTAAGGGGTTGGATTTTGTTATAGCTGAGGCTAGAAAGCATGGGATTAAGCTCATACTGAGCTTGGTGAATAACTATGAGAGTTTTGGAGGAAAGAAGCAGTATGTGAATTGGGCTAGAAGTAATAATGGACAGTATTTGACATCAGATGATGATTTCTTTAGGAACCCTGTTGTTAAAGGTTTCTACATCAACCATGTTAAGACTGTTCTTAACAGGTACAACAGTTTTACTGGAATTCATTACAAAGATGACTCAACAATCATGGCATGGGAGCTTATGAATGAACCTAGGTGTACATCAGATCCTTCAGGAAGAACTATTCAGGCTTGGATTACGGAAATGGCTTCTTTAGTAAAGTCCATTGACAGGAATCACTTATTGGAAGCTGGTCTTGAAGGGTTTTATGGACAATCAACACCACAAAGGACACAATTGAATCCTGCTTTGAACATAGGAACAGATTTCATCACCAACAATCGAATCCCAAACATCGATTTTGCAACAGTTCATTGTTATCCCGACCAATGGGAACAAAATTCAAATGAGCAAGATCAACTAGCATTTTTGAATAACTGGCTCAATGCTCATTTCCTAGATGCACAATATGCTCTAAAGAAACCAATACTTGTAGCAGAATTCGGAAAATCATTCAAAGATTCCGGTTACAGTACCAACCAGAGAGATCAACTTTTCAGTACCGTGTACTACAAGATATACGCGTCTGCGAAAAGAGGCGGTCCTGCGAGCGGAGCAATGTTCTGGCAACTTCTTACAGGAGGAATGGAATCTTTCGACGATGGTTATGGAATAATGCTTGGCCAGAGTTCTTCTACCGCTAATGTCATTGCTCAACAGTCTCATAAGTTATACCTTATTCGGAAGATTTACGCGAGGATTGCTAATGAACGAAGATGGAAAAGAGCTAGAGGTAATCGAAGGTCTTCGCGATTTGGTGGAAATAGAGGAGGACAAATTGGGAATTGA 1311 0.389 MKHFALFFLLAILVHQEYCSFNVEASGGDGFVRTRGIHFMLNGNPYYANGFNAYWLMYTAADPSQRFKVSNAFHEATSHGLTVARTWAFSDGGYSPLQYSPGFYNEQMFKGLDFVIAEARKHGIKLILSLVNNYESFGGKKQYVNWARSNNGQYLTSDDDFFRNPVVKGFYINHVKTVLNRYNSFTGIHYKDDSTIMAWELMNEPRCTSDPSGRTIQAWITEMASLVKSIDRNHLLEAGLEGFYGQSTPQRTQLNPALNIGTDFITNNRIPNIDFATVHCYPDQWEQNSNEQDQLAFLNNWLNAHFLDAQYALKKPILVAEFGKSFKDSGYSTNQRDQLFSTVYYKIYASAKRGGPASGAMFWQLLTGGMESFDDGYGIMLGQSSSTANVIAQQSHKLYLIRKIYARIANERRWKRARGNRRSSRFGGNRGGQIGN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01082 436 Pfam Cellulase (glycosyl hydrolase family 5) 68 342 IPR001547 GO:0004553|GO:0071704
Trre9g01082 436 Gene3D Glycosidases 28 402 - -
Trre9g01082 436 PANTHER - 3 421 IPR045053 GO:0004553
Trre9g01082 436 MobiDBLite consensus disorder prediction 416 436 - -
Trre9g01082 436 FunFam Mannan endo-1,4-beta-mannosidase 6 28 402 - -
Trre9g01082 436 SUPERFAMILY (Trans)glycosidases 31 391 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01082 Trre-Chr9 8610086 8613048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01082 1 436 Glycoside Hydrolase AT5G66460 66.514 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01082 K19355 - gmx:100792073 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01082 9 8610086 8613048 Trre9g01082 9 8610086 8613048 ECH