Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01052 ATGTCCGCCGCTAAATTAACCTCATGCGCCGCCGTAGCAGCCGCCGCAGCGGCTTCAATGTCCACTCGCTCCGATCGTGCTTATTCCGAATCTTACTTTCGTTTCCCTTTTTTCTCTTCTTCACCTTCCAATTCATCTTCTTCGACGGACCAATCATCTGACAACAAGTCGGAATCTCCACCGCCTGAAGAAACTAACAAGTCCGGTTTTGATCCTGATTCGTTAGAAAGAGCTGCTAACGCCATCCGTAATATCAATAAATCTCCTCACGCTAAAAAGGTGTTTGATTTAATGCGTAAACAGGAACAAACTCGTCTTGCCGAGATAGATGCTGAAAAAGTTTATTATGAACTTATTCAGACTCAAGGAGATATTGACAGGCTGCGTAAAATGCTTGAACAGAGACGGAATGAAATACAAGAGCAGAACCACAAGCTGGCTCAGGTGTTACGGCATGAAGATGAACTGCATAGGAAAAGAATGCAGACAGATCACGAAGATCAAAGACGACATAATGTTGAGTTGGTCCGGATGCAAGAGCAATCTTCTGCAAGAAAGGAGCAGGCAAAACAGGCTACCGAAGAACAGATTCAATCTCAGAAGCGTCAGACTGAAAGAGAGAGAGCTGAAATAGAAAGAGAAACCATTAGAGTTAAGAAAATGGCAGAAGCTGAAGCCAAAGTCCATGAAGCAAAATTGACTGAGGATCATAACAGGAGAATGCTTATAGATCGAATACAAGGGGAAAGGGATAAATGGCTTGCTGCAATTCATGCTACTTTTAGTCATATTGAAGGTGGTCTAAGAGTCTTATTGACTGATAGGGAAAAATTGGTTATGACTGTTGGAGGAGCTACAGCATTAGCTGCAGGAGTATATACAACAAGAGAAGGTGCGAAAGTTACATGGGGCTATATTAATCGGATTTTGGGGCAGCCATCATTGATCCGAGAATCATCCATGGCAAAGTTTCCAGGATCAAGGATCGTGTCTCAAGTCAAAAATAAAGTTTTAAATTTTAGTACCTTGGCCAAGGCAGAAAAGCCCGTTGGGAATCAAAATGGACTTGGAAATGTAATCCTGCATCCATCATTGCAGAGAAGAATAGCGCATCTAGCACGAGCAACATCAAATACCAAGGCCCATCAGGCACCATTTCGTAATATGCTTTTTTATGGGCCTCCTGGGACTGGTAAAACCATGGTCGCAAGGGAAATAGCTAGAAAATCGGGTTTGGATTATGCAATGATGACTGGAGGAGATGTTGCACCTCTGGGCCCACAAGCTGTTACCAAAATTCATGAGATATTCGATTGGGCCAAGAAATCTAATCGAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAACGTAACAGCATACACATGAGTGAAGCCCAAAGAAGCGCCCTAAATGCACTGCTTTTCAGAACTGGTGATCAGTCTAGAGACATAGTACTTGTGCTTGCCACAAACAGACCAGGAGATCTAGATAGTGCAATCACTGATCGGATTGACGAAGTTATTGAATTCCCACTTCCAGGAGAGGAGGAACGTCTTAAGTTATTGAACCTCTATTTGAACAAGTATCTACGTGATGAAAGTAATAGTTCCAAGGGGGGGTTATTCCTTAAGAAGCAACCCCAGAAGATTACCATAAAAGATTTATCCGAAGATGTGCTGAAAGAGGCTGCAAAGAAAACAGAGGGATTTTCTGGCCGTGAGATCGCCAAACTCATGGCTAGCGTTCAAGCGGCTGTCTATGGGCGCCCTGACTGCTCCTTGGATTCTCGGTTGTTTAAAGAAATTGTAGATTACAAGGTGGTGGAACATCATCAGAGATTGAAACTGGCAGCTGAAGGCGGCCTCCCCGCGTAA 1887 0.4361 MSAAKLTSCAAVAAAAAASMSTRSDRAYSESYFRFPFFSSSPSNSSSSTDQSSDNKSESPPPEETNKSGFDPDSLERAANAIRNINKSPHAKKVFDLMRKQEQTRLAEIDAEKVYYELIQTQGDIDRLRKMLEQRRNEIQEQNHKLAQVLRHEDELHRKRMQTDHEDQRRHNVELVRMQEQSSARKEQAKQATEEQIQSQKRQTERERAEIERETIRVKKMAEAEAKVHEAKLTEDHNRRMLIDRIQGERDKWLAAIHATFSHIEGGLRVLLTDREKLVMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSRIVSQVKNKVLNFSTLAKAEKPVGNQNGLGNVILHPSLQRRIAHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGPQAVTKIHEIFDWAKKSNRGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPGEEERLKLLNLYLNKYLRDESNSSKGGLFLKKQPQKITIKDLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCSLDSRLFKEIVDYKVVEHHQRLKLAAEGGLPA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01052 628 Gene3D - 335 533 IPR027417 -
Trre9g01052 628 SMART AAA_5 385 518 IPR003593 GO:0016887
Trre9g01052 628 MobiDBLite consensus disorder prediction 178 192 - -
Trre9g01052 628 MobiDBLite consensus disorder prediction 37 73 - -
Trre9g01052 628 Pfam ATPase family AAA domain-containing protein 3, N-terminal 50 317 IPR021911 -
Trre9g01052 628 Coils Coil 175 217 - -
Trre9g01052 628 FunFam ATPase family AAA domain-containing protein 3 343 533 - -
Trre9g01052 628 Coils Coil 118 152 - -
Trre9g01052 628 MobiDBLite consensus disorder prediction 178 210 - -
Trre9g01052 628 Pfam ATPase family associated with various cellular activities (AAA) 389 516 IPR003959 GO:0005524|GO:0016887
Trre9g01052 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 611 IPR027417 -
Trre9g01052 628 ProSitePatterns AAA-protein family signature. 488 507 IPR003960 GO:0005524|GO:0016887
Trre9g01052 628 MobiDBLite consensus disorder prediction 37 64 - -
Trre9g01052 628 PANTHER PUTATIVE ATP-ASE 20 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01052 Trre-Chr9 8426187 8432919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01052 365 592 Miscellaneous Gene Families AT5G53170 29.536 5.28e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01052 K17681 - gmx:100777755 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01052 9 8426187 8432919 Trre9g01052 9 8426187 8432919 ECH