Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01038 ATGGTACACAGTGCATACGATTGTTTAGAACTTGTCTCCAATTTCAACGGCAAGATCGAAGCAATTCAATCCTACGGTTCAAAGCTTCTACTCGGTTGCTCCGATGGATCTCTCCGAATTTACTCGCCGGAAACTGAATCCTCCTCCGACACCTCCGATCGTTCTAAACCTTACTTGCTTGAGAAGAATCTTACTGGTTTCGCCAAGAAACCTATTGTTTCAATGGAAGTTGTTGAATCTAGAGAGCTCCTTTTATCGCTCTCTGAATCCATCGCTTTCCATAAACTCTCTAGTTATGAAACTATAGCAGTTATTACCAAAGCTAAAGGTGCTAATGTCTTTTGCTGGGATGATCGGAGAGGTTTTCTTTGTTTCGCGAGGCAAAAACGCGTTTACATTTTCAGACATGATGGTGGTAGGGGATTTGTGGAGGTGAAAGAGTTTGGTGTACCGGACGTGGTGAAGTCCATGAGTTGGTGTGGGGAGAATATATGTTTGGGTATTAGAAGAGAATATATGATTTTGAATGCTTCGAATGGTGCTTTGTCCGAGGTTTTTACTTCGGGGAGACTAGCGCCGCCTTTAGTAGTACCTCTTCCGTCCGGGGAGCTGCTTCTTGGAAAGGAGAACATTGGGGTCTTTGTGGATCAAAATGGGAAACTTATTCCTGAAGGAAGGATTTGTTGGTCAGAGGCGCCCTTGGAAGTTGTGATTCAGAAGCCGTATGCTATTGCTTTGCTGCCCAGATTCGTGGAGATTCGCTCTCTTCGACAACCTTATCCGTTGATACAAACGATTGTTCTTCGCAATGTTCGTCATCTTTGCCAAAGCAGTAATTCCGTGATACTTGCTTTGGATAATTCTATTCAAGGTCTCTTCCCTGTTCCTCTTGGAGCCCAGATTGTCCAACTAACTGCTTCTGGCAACTTTGAAGAGGCTTTGTCATTGTGCAAGCTCCTTCCACCTGAAGAGTCAAGCCTACGTGCTGCAAAAGAGGGATCGATTCATATAAGATATGCCCATTATCTTTTTGAGAATGGAAGCTATGAGGAGGCTATGGACCATTTTCTGGCATCTCAAGTAGATATAACCTACGTGCTTTCTCTTTATCCATCCATTATCCTTCCAAAGACAACTATTGTTCATGAGCCAGAGAAGTTCGACATTGAAAGGGATGCTTCCCATCTCTCCAGAGTTTCGTCAGGTCTTTCAGATGATATGGACTCACCATCTGACGAGAGTGCAGCACTTGAATCCAAAAAAACAAACCATAATATGCTTATGGCTCTCATAAAATATTTACAGAAGAAGCGAGGTAATTTTATTGAGAAGGCTACTGCAGAGGGGACTGAAGAAGTTGTTTTAGACGCAGTTGGGGATAGCTTTGCATCCTACAATAGGTTTAAGAAAGCAAACAAGGGGCGTGGTAATATGTCGGTTGGTTCTGGAGCTCGGGAATTAGCTGCAATATTAGATACTGCTCTACTCCAAGCATTGCTTCTTACTGGACAGTCTTCAGCGGCTTTAGAATTGCTTAGAGGTGTTAATTACTGTGATATGAAAATATGTGAAGAAATACTTCGGAAAGGCAACCTCAATGTTGCTTTATTAGAACTTTACAAGTGCAAGTCATTGCACCGGCAAGCTCTTGAACTTCTTCACAAGTTGGTAGAAGAGTCAATATCCAGTCAGTCTGAAATCACACAAAGGTTCAAGCCTGAGGACATCGTTGAATATCTCAAGCCGCTATGTGAGACAGATCCCATACTTGTTCTGGAATTCTCAATGCTTGTTCTTGAAAGCTGTCCAACCCAAACTATTGAGCTCTTTCTGTCTGGAAATATACCTGCGGATATGGTGAATTCGTATTTGAAGCAGCACTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGGATGAGAATGCCATATCTGGCAATCTGCAAAATGAAATGGTAAACATATACCTATCTGAAGTACTTGATTGGCATGCTGACTTAAACGCTCAACAAAATTGGGATGAGAAAACTTACACCCCAACTAGGAAAAAGTTATTGTCGGCTTTAGAAGGTATATCGGGATACAATCCAGAGGCTCTGCTGAAACGTCTTCCTCAAGATGCTTTATACGAAGAGCGTGCATTATTGTTGGGAAAAATGAACCAACATGAACTGGCGTTGTCTTTGTATGTACATAAGCTTCATGTTCCAGAGTTGGCATTATCTTATTGTGATCGGGTGTACGAGTCTATGCATCAGCCATCTGTAAAAAATTCTAGCAACATATACCTATTGCTTCTGCAAATATATTTGAATCCTCGAAGGACCACGGCAAGCTTTGAAAAGAGAATTTCACATTTATTATCATCCCCACCAAGTTCAGCCATTTCTAGAGTTAGTTCAACATCTGTAAAAAGCAAAGGAGGCCGAGGAACCAAGAAAATTGCTGAGATTGAGGGTGCAGAGGACACAAAAGTTAATTTGAGCAGCACTGACAGTAGCAGGAGTGATGGTGATACAGATGAATTTAATGAGGGTGGCTCTACTATCATGCTTGATGAGGTCCTTGACTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCAAGAGAGACTAAGTTACAGGATTTGCTATCATTTCTTGAACCCCTTTTGAGAAAATCCAGTGAACTGTACCGTAACTGTTCAGTGATCAAGAGCTTGAGACAGAGTGAGAACCTTCAGGTAAAAGATGAACTGTATAGTCAGAGGAAAGCAGTTGTACAGGTAACTGGCGATAGCATGTGTTCTCTGTGCCGAAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCAAATGGGAGCACTCTTGTGCACTTCGTCTGTTTTAAAGATTCTCAAAATATGAAAGCAGTGGCCAAAGGGTCTCAATTGAGGAAGCGATAA 2955 0.422 MVHSAYDCLELVSNFNGKIEAIQSYGSKLLLGCSDGSLRIYSPETESSSDTSDRSKPYLLEKNLTGFAKKPIVSMEVVESRELLLSLSESIAFHKLSSYETIAVITKAKGANVFCWDDRRGFLCFARQKRVYIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICLGIRREYMILNASNGALSEVFTSGRLAPPLVVPLPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHLCQSSNSVILALDNSIQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEESSLRAAKEGSIHIRYAHYLFENGSYEEAMDHFLASQVDITYVLSLYPSIILPKTTIVHEPEKFDIERDASHLSRVSSGLSDDMDSPSDESAALESKKTNHNMLMALIKYLQKKRGNFIEKATAEGTEEVVLDAVGDSFASYNRFKKANKGRGNMSVGSGARELAAILDTALLQALLLTGQSSAALELLRGVNYCDMKICEEILRKGNLNVALLELYKCKSLHRQALELLHKLVEESISSQSEITQRFKPEDIVEYLKPLCETDPILVLEFSMLVLESCPTQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMDENAISGNLQNEMVNIYLSEVLDWHADLNAQQNWDEKTYTPTRKKLLSALEGISGYNPEALLKRLPQDALYEERALLLGKMNQHELALSLYVHKLHVPELALSYCDRVYESMHQPSVKNSSNIYLLLLQIYLNPRRTTASFEKRISHLLSSPPSSAISRVSSTSVKSKGGRGTKKIAEIEGAEDTKVNLSSTDSSRSDGDTDEFNEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLLSFLEPLLRKSSELYRNCSVIKSLRQSENLQVKDELYSQRKAVVQVTGDSMCSLCRKKIGTSVFAVYPNGSTLVHFVCFKDSQNMKAVAKGSQLRKR 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01038 984 Pfam Vacuolar sorting protein 39 domain 1 491 599 IPR019452 -
Trre9g01038 984 PANTHER CNH DOMAIN CONTAINING 2 973 IPR032914 GO:0016192
Trre9g01038 984 MobiDBLite consensus disorder prediction 793 811 - -
Trre9g01038 984 Pfam CNH domain 26 276 IPR001180 -
Trre9g01038 984 Pfam Vacuolar sorting protein 39 domain 2 859 967 IPR019453 -
Trre9g01038 984 SUPERFAMILY WD40 repeat-like 22 171 IPR036322 GO:0005515
Trre9g01038 984 MobiDBLite consensus disorder prediction 793 847 - -
Trre9g01038 984 ProSiteProfiles Citron homology (CNH) domain profile. 16 281 IPR001180 -
Trre9g01038 984 Pfam Region in Clathrin and VPS 619 749 IPR000547 GO:0006886|GO:0016192
Trre9g01038 984 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 594 781 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01038 Trre-Chr9 8264476 8270456 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01038 K20183 - gmx:100805342 1578.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01038 9 8264476 8270456 Trre9g01038 9 8264476 8270456 ECH