Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01033 ATGTGGCGGTGCGTCGCTCGTGGACTTCGCGTTCCACCTTCTAACAACAGATCCAATTCCTCTCTCGGATCTCATCTTTCTAGATTCTTCTCTAGTGGTGTAAATTCATCTTACACCGTTGTAGATCATACTTATGATGCAGTTGTGGTAGGTGCTGGTGGTGCTGGATTGAGAGCTGCTATTGGACTCTCAGAACATGGATTCAATACTGCTTGTATTACCAAGCTTTTTCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGCATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAAGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCGGTTATTGAACTAGAGAATTACGGATTGCCTTTTTCTCGAACAGAGGAGGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAGACACAATACACAGTTTTTTGTGGAATATTTTGCCTTGGATCTTTTAATGAACAGTGATGGTAGTTGCCAAGGAGTAATTGCCTTAAATATGGAGGATGGCACACTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGCAGAGCGTACTTCTCAGCAACCTCAGCACATACATGCACCGGAGATGGCAATGCCATGGCTGCACGTGCTGGGATCGGGCTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACGGGTATATATGGAGCGGGTTGCCTTATAACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGCGAGGGGGAGCGATTTATGGAACGATATGCTCCTACAGCTAAGGATCTTGCATCCAGAGATGTAGTTTCAAGATCGATGACTATGGAGATCCGGGAAGGTCGTGGTGTAGGACCCATGAAGGATCACATCTATCTACACTTGAATCATCTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACTGTGCATTATAACATGGGTGGCATTCCCACAAATCATCATGGAGAGGTAGTTACCATTAAAGGTAACGATCCAGATGCATTAGTTCCTGGGTTGATGGCTGCTGGGGAAGCAGCCTGTGCATCAGTTCATGGTGCCAACAGACTTGGTGCAAATTCACTTTTGGATATTGTTGTTTTTGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGCCAGAAAACGATTGCTTGGCTGGACAAATTGAGAAATTCAAATGGATCATTACCTACTTCAAAAATTCGTTTGAATATGCAACGAGTAATGCAAAATAATGCTGCTGTATTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGTTTCCATGATGTCAAGGTTGAGGACCGAAGTTTAATATGGAATTCGGACTTGATCGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACAATGCACTCTGCAGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGAAAAGAGATGATGAGAACTGGATGAAACACACATTGGGATTCTGGGAGAACGAGAAAGTTCGATTGGATTATAGGCCAGTGCATTTGAATACATTGGATGATGAAGTTGAATCATTCCCTCCTAAGGCTCGTGTGTATTAA 1848 0.4383 MWRCVARGLRVPPSNNRSNSSLGSHLSRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPMKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGNDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKVEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01033 615 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 454 570 - -
Trre9g01033 615 SUPERFAMILY FAD/NAD(P)-binding domain 37 450 IPR036188 -
Trre9g01033 615 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 80 89 IPR003952 GO:0016491
Trre9g01033 615 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 284 387 IPR027477 -
Trre9g01033 615 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 284 387 - -
Trre9g01033 615 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 46 615 IPR014006 GO:0016627|GO:0022900|GO:0050660
Trre9g01033 615 Gene3D succinate dehydrogenase protein domain 566 615 - -
Trre9g01033 615 Pfam Fumarate reductase flavoprotein C-term 484 615 IPR015939 GO:0016491
Trre9g01033 615 Gene3D - 455 565 - -
Trre9g01033 615 PIRSF SDHA_APRA_LASPO 35 604 - -
Trre9g01033 615 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 34 266 - -
Trre9g01033 615 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 474 615 IPR037099 GO:0016491
Trre9g01033 615 NCBIfam succinate dehydrogenase flavoprotein subunit 43 615 IPR011281 GO:0006099|GO:0016627|GO:0050660
Trre9g01033 615 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 567 615 - -
Trre9g01033 615 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 274 392 IPR027477 -
Trre9g01033 615 Gene3D - 46 450 IPR036188 -
Trre9g01033 615 Pfam FAD binding domain 46 442 IPR003953 -
Trre9g01033 615 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 34 615 IPR030664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01033 Trre-Chr9 8207455 8213469 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01033 K00234 - gmx:100803020 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01033 9 8207455 8213469 Trre9g01033 9 8207455 8213469 ECH