Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01013 ATGAAGTGCCCATACTGTTCGGCGGCGCAAGGTCGTTGCGCCACAACAACCACCGGAAAATCCATAACAGAATGCACATCTTGCGGCCGCGTAGTAGAAGAACGACAATCCCATCCTCACCACATATTCCATCTCCGCGCCCAAGACAATCCTCTATGTCTAGTCACATCAGATCTCCCTCTCCCCACACTCAACCAAAACAACGAACAACACAACACCACCGCAACCACCACCACAACCACCACCAACAACGACGATGAAGAAGACCCGTTCGAACCCACGGGCTTCATAACTTCCTTCTCTACATGGTCTTTAGAGCATAATCCGCTTTACCTTCAATCATCTCTCTCTTTCTCTGGCTATCTCGCTGAACTTGAACGCACTCTTGAATCATCTTCTTCTGCTTCGTCGTCTTCTGTTGTTGTCGATAATCTTAGGGCTTATATGCAGATTATCGATGTTTCTTCTATACTTGGATTAGATTGTGATATTTCTGATCACGCTTTTCAATTATTTAGGGATTGTTGTTCTGCTACTTGTTTGAGAAATCGTAGTGTTGAAGCTCTTGCTACTGCTGCTCTTGTTCAGGCTATTAGAGAAGCTCAAGAACCTAGAACACTTCAGGAAATTTCAATTGCTGCCAATGTAGCACAAAAGGAAATCGGGAAATACATCAAGATATTGGGAGAAGCTTTACAGCTAAGTCAACCTATTAACAGCAATTCTATATCAGTTCATATGCCAAGATTTTGCACTCTTCTTCAGCTCAATAAATCTGCTCAGGAACTGGCCACTCACATAGGAGATGTTGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCAATTAGCATCTCAGCTGCTGCCATATATTTGGCTTGCCAACTAGAAGACAAACGCAAAACCCAGGCCGAAATTTGTAAAGTAACCGGTCTTACTGAAGTCACTCTCCGTAAAGTGTACAAAGAATTACTGGAGAATTGGGATGATTTACTTCCCTCTAATTACACCCCAGCTGTTCCGCCGGAGCGGGCATTTCCCACAACCTTAATTGCTTCTGGACGTTCTTCAACAACTAAGGTTGATGCTATAGAGGTTAGCTCTTCTTTGGACTCTGAAAATTTACCGGAATTTAAACCAAACAAACCTAATGAGGTCTCGGTCGTGGTCCATCCGTCAAGAGGAAAAGATGAGGCCGATGGTAAAAGCAACGCTCATGCAAGCCATTCCATCGCTATTCAACAGTCAACTTTCTGGCAATCCCAACTTCCCAGTGCGACACACAATCATCAAAATCAGAATATTTTAGAATCAATGGATATTGATACGTTGCAACACAACCACCAACAACCTGAATCAATGGTAGATGTAACAAATGGTGTTGCTACCGCTAGTTCTCTAAAATCAAGCCAACTTTACAGTCCTCCTGCTTCAAGTTCAAGCTCTGTTATGAGGTCGTTTTCAGCTCCTCCTTCATCTGCTCCCCCAAATATTCGACTACTGCAATCGTCTAAGACAATGCCAGGTTTTCCAGAGTACTGA 1542 0.4358 MKCPYCSAAQGRCATTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTSDLPLPTLNQNNEQHNTTATTTTTTTNNDDEEDPFEPTGFITSFSTWSLEHNPLYLQSSLSFSGYLAELERTLESSSSASSSSVVVDNLRAYMQIIDVSSILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVAQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTLIASGRSSTTKVDAIEVSSSLDSENLPEFKPNKPNEVSVVVHPSRGKDEADGKSNAHASHSIAIQQSTFWQSQLPSATHNHQNQNILESMDIDTLQHNHQQPESMVDVTNGVATASSLKSSQLYSPPASSSSSVMRSFSAPPSSAPPNIRLLQSSKTMPGFPEY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01013 513 Gene3D - 245 341 - -
Trre9g01013 513 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 368 IPR000812 GO:0006352|GO:0070897
Trre9g01013 513 FunFam Transcription initiation factor TFIIB 145 236 - -
Trre9g01013 513 Pfam Transcription factor TFIIB repeat 147 228 IPR013150 GO:0017025
Trre9g01013 513 Pfam Transcription factor TFIIB repeat 245 326 IPR013150 GO:0017025
Trre9g01013 513 PRINTS Transcription initiation factor IIB signature 312 326 IPR000812 GO:0006352|GO:0070897
Trre9g01013 513 PRINTS Transcription initiation factor IIB signature 246 264 IPR000812 GO:0006352|GO:0070897
Trre9g01013 513 PRINTS Transcription initiation factor IIB signature 280 296 IPR000812 GO:0006352|GO:0070897
Trre9g01013 513 PRINTS Transcription initiation factor IIB signature 191 210 IPR000812 GO:0006352|GO:0070897
Trre9g01013 513 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Trre9g01013 513 PRINTS Transcription initiation factor IIB signature 217 232 IPR000812 GO:0006352|GO:0070897
Trre9g01013 513 FunFam Transcription initiation factor IIB 245 342 - -
Trre9g01013 513 CDD CYCLIN_TFIIB_archaea_like_rpt2 242 328 - -
Trre9g01013 513 MobiDBLite consensus disorder prediction 468 504 - -
Trre9g01013 513 SMART cyclin_7 245 326 IPR013763 -
Trre9g01013 513 SMART cyclin_7 149 230 IPR013763 -
Trre9g01013 513 SUPERFAMILY Cyclin-like 243 341 IPR036915 -
Trre9g01013 513 MobiDBLite consensus disorder prediction 63 89 - -
Trre9g01013 513 MobiDBLite consensus disorder prediction 468 513 - -
Trre9g01013 513 MobiDBLite consensus disorder prediction 63 84 - -
Trre9g01013 513 Gene3D - 145 236 - -
Trre9g01013 513 SUPERFAMILY Cyclin-like 146 236 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01013 Trre-Chr9 7998589 8001229 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01013 K03124 - gmx:102662353 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01013 9 7998589 8001229 Trre9g01013 9 7998589 8001229 ECH