Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00973 ATGTCGATTCCCTTTCTTCGTGACTTCAACAGATTAACATTGCAATTTCACATTCAAATTTGTTTCTATAGTCGTCGTCGTGATCCTTTTCCCACCAAAATTTGTCACTACTTAAACCGTGCTAAACTCATCGATTCAATTCGTCTTTCTTTACGCTCCAAAAACCCTAATTCTACACTCCAAACTCTCATAAATCACCGTTTATTTGACTCTTATGTTCTCACTCATGCACTTCGTTCTGCACCTTGTGCAGATTCTGCACTTTCCCTTATTAACACCATTGAGAATGCAAAAAGTTCCAATTTTTCACATACCCAGAATACCCTACATGCCCTTTCCACTGTTCTTGCAAAATCCGGTCGATGTAATGAGCTCAAATTGCTTATCGATGATATTCGAAGTAAACGGTTTGGTAATGTTAAGATTAGTTTTATGAATCTAATGAAATGGTATGCTGAAGCTAAGGATATCGATTCTGTTCTCGAGGTTTTGGATCGGTATAGAGTTGAAAGTAAAGTAGTATGTACTGAATCTTATAACATTGTTATGGCTCTTTATGTGGAAATTGGTAAGGATTTTGAGGCTGTTGGAGTTTTTCGTAAGATGTTTGATGATGGGTCGGTTCCGAATTGTAGAAGTTATAGTATAATAATCGAGCATCTTGTGAAATGTAGAAAGTTTTTGGAAGCTGTTGAGGTTTTTAATTTGTTGCCTTTGATGAGGATTAAACGTACTTTGAAGCAGTATTCGGTTTTAATTGAAGGTTTGGTTGGTAGTAAAATGTTTGATGAAGTTGGTGTTTTGGTTAATGAGATGCAAGTTGATGGAATATTACCGAGTCGAACGATGAGTTTGTTGTTGCAGCAGGTAAAGGATGAAGGATTTCTTAAGGATGTGGATGAATTGTTTGGAGAAATTTGCCCGGATGAAAGAATCAAGAATGTGAGATTTTCTATTGATAGTAGTGACGAGGATGAGAATGAAAATGAGGACGAGGGTGAAAATGAGAATGATGCTTCGCAATGTGATCATATAGATGGGATTTGCTTAAAACCGTGGCTAGATCCGCGGTCTTTGGCTAGTGCCTTACAGAAGTGGAGTCCTTATGAGGTATCAGCACTAGAGGATGCAAAGTTTGTGTGGACAACTAGGTTGGTATGCAAGATACTTAGATGTTTCAAGTCACCGGATACTGCATGGAATTTCTTCTGCTGGGTTGCAGATCAACCTGGATTTACTCATAATATATACACGGTGCAAAGAATCATGACCCTTCTAGCTCGCCATGGACGTACTGAATTAGTTGATAAACTCATATATAAGATCAGAGTAGAGGGAATGAGACTACCATTCAGTACCATAAGGTTAATCATCGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAACGATGATCGAATACTTTGTGGGTCTATATCGAAAGTTAACTTGATGCTTCTGTATTCTTCTCTTTTGAGAACATTAACCAAGTGTGGTAGGGATTCTGATGCCCTGGAAATGGTTGATGAGATGATCTTAAATGGTATTTGCCCAGATATCCAAACATTTTCAGGTCTAATGCAATATTTTTCACAAAGTGGAGACATTAAAACTGTGCACAAACTCTTTTTGATGGTCAAGCAGAGCGGTTTTGAGCCAGACGCGTATCTGTTTAAGGTGCTAATCGAAGGTTATTGCAAGTCGAAAAGAGCTGCACTGGCTTGGAAGCTATTTGAAGACATGAAAAATTCAGGTTTGATGCCTGATTCTTCCACCAAAGAGTTGCTTGTGAAGAGCCTTTGGAGAGAAGGGAGACGGAGAGAAGCCGCATCAGTTGAAGAGAGCTGTGAGGAAGTGAATGTGGTCCTTCCACTTGCATTGCCTGGTCATGTATGGACCGTCAGCTCTGCAGATCTCACAAGAGTTTATAACATTTATTCTAATTGTTTTGCTTCAAAAGGTGGCTAG 1983 0.3888 MSIPFLRDFNRLTLQFHIQICFYSRRRDPFPTKICHYLNRAKLIDSIRLSLRSKNPNSTLQTLINHRLFDSYVLTHALRSAPCADSALSLINTIENAKSSNFSHTQNTLHALSTVLAKSGRCNELKLLIDDIRSKRFGNVKISFMNLMKWYAEAKDIDSVLEVLDRYRVESKVVCTESYNIVMALYVEIGKDFEAVGVFRKMFDDGSVPNCRSYSIIIEHLVKCRKFLEAVEVFNLLPLMRIKRTLKQYSVLIEGLVGSKMFDEVGVLVNEMQVDGILPSRTMSLLLQQVKDEGFLKDVDELFGEICPDERIKNVRFSIDSSDEDENENEDEGENENDASQCDHIDGICLKPWLDPRSLASALQKWSPYEVSALEDAKFVWTTRLVCKILRCFKSPDTAWNFFCWVADQPGFTHNIYTVQRIMTLLARHGRTELVDKLIYKIRVEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDRILCGSISKVNLMLLYSSLLRTLTKCGRDSDALEMVDEMILNGICPDIQTFSGLMQYFSQSGDIKTVHKLFLMVKQSGFEPDAYLFKVLIEGYCKSKRAALAWKLFEDMKNSGLMPDSSTKELLVKSLWREGRRREAASVEESCEEVNVVLPLALPGHVWTVSSADLTRVYNIYSNCFASKGG 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00973 660 MobiDBLite consensus disorder prediction 323 337 - -
Trre9g00973 660 Pfam PPR repeat 178 206 IPR002885 -
Trre9g00973 660 Pfam PPR repeat 213 236 IPR002885 -
Trre9g00973 660 Pfam PPR repeat 249 277 IPR002885 -
Trre9g00973 660 Pfam PPR repeat 493 521 IPR002885 -
Trre9g00973 660 MobiDBLite consensus disorder prediction 318 341 - -
Trre9g00973 660 Gene3D Tetratricopeptide repeat domain 193 347 IPR011990 GO:0005515
Trre9g00973 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Trre9g00973 660 Pfam PPR repeat family 565 605 IPR002885 -
Trre9g00973 660 NCBIfam pentatricopeptide repeat 493 525 IPR002885 -
Trre9g00973 660 NCBIfam pentatricopeptide repeat 563 594 IPR002885 -
Trre9g00973 660 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Trre9g00973 660 Gene3D Tetratricopeptide repeat domain 359 485 IPR011990 GO:0005515
Trre9g00973 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Trre9g00973 660 PANTHER OS01G0167750 PROTEIN 18 657 IPR044175 -
Trre9g00973 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Trre9g00973 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Trre9g00973 660 Gene3D Tetratricopeptide repeat domain 68 190 IPR011990 GO:0005515
Trre9g00973 660 Gene3D Tetratricopeptide repeat domain 486 657 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00973 Trre-Chr9 7552943 7554925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00973 496 624 Glycosyltransferase AT1G05670 28.682 3.10e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00973 - - cam:101514749 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00973 9 7552943 7554925 Trre9g00973 9 7552943 7554925 ECH