Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00934 ATGACAGGTTCATCAAGAAAAGGACGCTTATTCTTAGACGAAGGGAGCATTCATGGTGGAAGATATGGAAAATTAAAAAAGAACGACGAATTCGACGGTTACAACTCCGACAATCACCCAAGAAAAAACAGCCCTGTCGTCACCACCGAGGCACCACATTTAGATCCTCAAATGGCATCTGACAATTCATCATACGACGCATCTCTCTCACCATTATCAAAATCACCATGGTCTTCTCACCTCAATGAAGATACTTCATCCGCCGAAGATGCTCTTGTTGGTTCATTGGTTCGCGAAGAAGGTCACATTTACTCGCTTGCAGCTACAAAGGATTTATTATACACCGGTTCAGATAGTAAAAACATTCGTGTTTGGAAGCATCAAAAGGAATTCGCAGGGTTTAAATCAAATAGTGGTTTAGTGAAAGCCATTGTGATTGCCGGTGAGAAAATTCTTACTGGACATCAAGACGGGAGAATCCGTGTCTGGAGAGTGTCCAGTAGGAATGAAGAAATTCATAAAAGAGTTGCCACTTTACCAACTTTAAGAAATTATATCAAATGTTCAATAAAACCGAGCAACTATGTTGAAGTTAGACGACACCGTAATGTATTATGGATTAAACATTACGATGCAATTTCGTGTTTGAGCTTAACGGAAGATCTTACGTTAATTTACTCGGCTTCATGGGATAAAACATTCAAAGTTTGGCGTGCTTCAAATTACAAATGTTTAGAATCAGTAACGGCGCATGATGACGCCGTTAATGCGCTTGTAGTTGGGTTTGATGGTTTGGTTTTTACCGGTTCAGCTGATGGAACTGTTAAGATTTGGCGGCGTGAAATGCAAGGGAAAGGAACAAAGCATTTTTTTTCACAAACATTGTTGAAACAAGAATGTGCTGTGACATCTTTAGCGTTAAATGTGGAAGGGACGTTTTTATACGCCGGTTCTTCAGATGGGTTGGTTAATTATTGGAAGCGGGAAACAAATTTGGAACACGCTGGAGTTTTGAGAGGTCATAAATTGGCGGTTTTGTGTTTAGCGACAGCTGGAAGTTTGATATTTAGTGGTTCTGCTGACATGGCAATTTGTGTGTGGAAAAGATCGATGAATAATGATCATATTTGTACGACGGTGTTGAGTGGACATACCGGACCGGTGAAATGTCTAGCCGTCGAGAAAGATCCCGATGCGATGTTGAATGAGAAAAAGTGGATATTGTATAGTGGGAGTTTGGATAAATCTGTTAAGGTTTGGAAGGTTACGGAGAGTGGGGCCCCTGGACAACATCACCAACCACCGCCGCGTCTTAGTGTTTCCGGACCACCGCCGCGTCTTAGTGTTTCCGGACCACCACCGCGACTTAGTGTTAGTAGTGGTGATTTTCCTAGAGTGTCGTCGATAAGGAAAATGGGATCACGAAGATACTAG 1434 0.4198 MTGSSRKGRLFLDEGSIHGGRYGKLKKNDEFDGYNSDNHPRKNSPVVTTEAPHLDPQMASDNSSYDASLSPLSKSPWSSHLNEDTSSAEDALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKHQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWRVSSRNEEIHKRVATLPTLRNYIKCSIKPSNYVEVRRHRNVLWIKHYDAISCLSLTEDLTLIYSASWDKTFKVWRASNYKCLESVTAHDDAVNALVVGFDGLVFTGSADGTVKIWRREMQGKGTKHFFSQTLLKQECAVTSLALNVEGTFLYAGSSDGLVNYWKRETNLEHAGVLRGHKLAVLCLATAGSLIFSGSADMAICVWKRSMNNDHICTTVLSGHTGPVKCLAVEKDPDAMLNEKKWILYSGSLDKSVKVWKVTESGAPGQHHQPPPRLSVSGPPPRLSVSGPPPRLSVSSGDFPRVSSIRKMGSRRY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00934 477 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 52 424 IPR045182 -
Trre9g00934 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 327 IPR001680 GO:0005515
Trre9g00934 477 Pfam WD domain, G-beta repeat 336 368 IPR001680 GO:0005515
Trre9g00934 477 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Trre9g00934 477 Pfam WD domain, G-beta repeat 377 421 IPR001680 GO:0005515
Trre9g00934 477 Pfam WD domain, G-beta repeat 209 237 IPR001680 GO:0005515
Trre9g00934 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 278 IPR001680 GO:0005515
Trre9g00934 477 MobiDBLite consensus disorder prediction 425 477 - -
Trre9g00934 477 SMART WD40_4 288 327 IPR001680 GO:0005515
Trre9g00934 477 SMART WD40_4 127 164 IPR001680 GO:0005515
Trre9g00934 477 SMART WD40_4 200 238 IPR001680 GO:0005515
Trre9g00934 477 SMART WD40_4 89 126 IPR001680 GO:0005515
Trre9g00934 477 SMART WD40_4 374 421 IPR001680 GO:0005515
Trre9g00934 477 SMART WD40_4 331 368 IPR001680 GO:0005515
Trre9g00934 477 SMART WD40_4 241 279 IPR001680 GO:0005515
Trre9g00934 477 MobiDBLite consensus disorder prediction 1 71 - -
Trre9g00934 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 422 IPR001680 GO:0005515
Trre9g00934 477 MobiDBLite consensus disorder prediction 55 71 - -
Trre9g00934 477 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Trre9g00934 477 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Trre9g00934 477 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Trre9g00934 477 Gene3D - 207 466 IPR015943 GO:0005515
Trre9g00934 477 MobiDBLite consensus disorder prediction 11 37 - -
Trre9g00934 477 CDD WD40 100 421 - -
Trre9g00934 477 MobiDBLite consensus disorder prediction 437 451 - -
Trre9g00934 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Trre9g00934 477 SUPERFAMILY WD40 repeat-like 100 433 IPR036322 GO:0005515
Trre9g00934 477 Gene3D - 84 205 IPR015943 GO:0005515
Trre9g00934 477 FunFam BnaA09g28200D protein 196 283 - -
Trre9g00934 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00934 Trre-Chr9 7195095 7196528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00934 242 423 Miscellaneous Gene Families AT5G08390 28.042 5.98e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00934 - - gmx:100778593 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00934 9 7195095 7196528 Trre9g00934 9 7195095 7196528 ECH