Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00903 ATGGTTTCCGAATCCGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGTAACTCCGACCTCGACACCACCACTACTTCCACCGTCCGCCGTCAGTTAGAATCCGATTTCGGTATCGATTTATCTGATAGAAAAGCATTCATCAGAGAACAAGTAGACCTATTCCTTCAAACCATTCATCAACAACAAAACGACGTCGCCGATGAAGAAAACGCCGATGAACCAGAACAAAGCCAACAAGAGCAAGACGATGATAATGAGGAAGAGGAACAAGAGGAGGAGGAAGAAAAACCGAAGCGTACCAGAAGTGTGAAGAAGAAAACGACAAAGAACAAGAGCAAAGAACGATCTAACAAGTCAGGTGATGAGGTAGTAAAGAAAAAAGGTGGTGGTGGTTTTTGCAAAATATGTAGCCTGTCTCCACAACTTCAGGAATTCGTTGGAGCACCAGAGATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAAAAAAATTTGCAAGATCCAAACAATAGGCGAAATATCCTTTGTGATGAACCATTGCGTGCCCTTTTTGGTGTCAATACCATCAATATGTTCCAAATGAATAAAGTATTGGCAAAGCATATCTGGCCACTGGATTCAGATGATGTTGTCCAGGTGAAAAAGTCAGTGCCAAAAGAAAAGAAGAAGAAGAAGCAAGAGAGAGAAGATGACGATTCAGATGAGCCGAAAGGAAAGGAAAAACGGCAGAAGGGAGGATCAGGAAAAGGTTTTCTTGCTCCACTTCAGCTATCTGATGCCCTTTCAAAGTTCCTTGGAGAAAGTGAATTATCAAGATCTGATGTCATTAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGCGGCAAATATTATGTGACGAAAAATTGAAAGAACTCTTTGAGGTTGACTCCTTCACTGGCTTCACCGTTACAAAACTGCTGGCGCCTCATTTCATAAAGGCAGAGCAGTGA 1005 0.4279 MVSESELIGRLREFLRNSDLDTTTTSTVRRQLESDFGIDLSDRKAFIREQVDLFLQTIHQQQNDVADEENADEPEQSQQEQDDDNEEEEQEEEEEKPKRTRSVKKKTTKNKSKERSNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPNNRRNILCDEPLRALFGVNTINMFQMNKVLAKHIWPLDSDDVVQVKKSVPKEKKKKKQEREDDDSDEPKGKEKRQKGGSGKGFLAPLQLSDALSKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELFEVDSFTGFTVTKLLAPHFIKAEQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00903 334 SMART swib_2 255 334 IPR019835 -
Trre9g00903 334 SMART swib_2 132 211 IPR019835 -
Trre9g00903 334 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 211 - -
Trre9g00903 334 MobiDBLite consensus disorder prediction 60 125 - -
Trre9g00903 334 Coils Coil 76 96 - -
Trre9g00903 334 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Trre9g00903 334 FunFam Upstream activation factor subunit 125 214 - -
Trre9g00903 334 Gene3D SWIB/MDM2 domain 126 214 IPR036885 -
Trre9g00903 334 SUPERFAMILY DEK C-terminal domain 3 56 - -
Trre9g00903 334 MobiDBLite consensus disorder prediction 218 255 - -
Trre9g00903 334 MobiDBLite consensus disorder prediction 67 93 - -
Trre9g00903 334 MobiDBLite consensus disorder prediction 218 250 - -
Trre9g00903 334 SUPERFAMILY SWIB/MDM2 domain 129 210 IPR036885 -
Trre9g00903 334 Gene3D - 1 57 - -
Trre9g00903 334 FunFam Upstream activation factor subunit 245 334 - -
Trre9g00903 334 Pfam SWIB/MDM2 domain 135 206 IPR003121 -
Trre9g00903 334 Pfam SWIB/MDM2 domain 258 329 IPR003121 -
Trre9g00903 334 Pfam DEK C terminal domain 2 55 IPR014876 -
Trre9g00903 334 ProSiteProfiles SWIB/MDM2 domain profile. 131 208 IPR003121 -
Trre9g00903 334 CDD SWIB-MDM2_like 136 206 - -
Trre9g00903 334 SUPERFAMILY SWIB/MDM2 domain 253 333 IPR036885 -
Trre9g00903 334 ProSiteProfiles SWIB/MDM2 domain profile. 254 331 IPR003121 -
Trre9g00903 334 CDD SWIB-MDM2_like 259 329 - -
Trre9g00903 334 Gene3D SWIB/MDM2 domain 249 334 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00903 Trre-Chr9 6998257 7002308 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre9g00903 SWIB 3.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00903 K15223 - gmx:100786835 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00903 9 6998257 7002308 Trre9g00903 9 6998257 7002308 ECH