Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00589 ATGGTTCTTCAATTTCATGAACACATAATCACAGAGCTTCTAGAAGATTCCAATGGCGGTCTCGTCGTTCTCTCTTCAGGTCTTTCTCTATCGAAACTCATTTCATCTCTTCTCCTTCTCCATTCATCTTCTCAAGGAACACTTCTCATTCTCTCTCCTTCTTCCACCACACTCAATTCCAAAATCAATTTCCATCTCAAAACCCTAAACCCCCAATTCTATCAAATCCCCGCCGAAATCACCGCCGATCTCCCCATTCACCACCGTCACTCTCTCTACACATCCGGTTCCGTCTTTTTCATCACTCCTCGAATCCTAATCGTCGATCTCCTCACTAAAAAACTACCTACATCAGCGATTTCAGGACTTATCATTCTCAACGCTCATTCCATTTCTGAAACTTCTACGGAAGCTTTTATTGTTAGGATTTTCCGTTCACTCAACCGTGATGCATTTATTCGTGTTTTTTCCGATAGGCCGCAGGCGATGGTGTCCGGTTTCGCGAAAGCGGAGAAGACTATGAAGTGTTTGCAAATACGGAAGCTGCATTTATGGCCTAGATTTCAGGTTTATGTTTCTCAGGAGCTTGAGAGGGATCCACCGGATGTTGTGGATATTAGGGTTCCGATGAGTAAGTATATGGTGGGGATTCAGAAGGCTATTATTGAGGTTATGGATGCTTGTTTGAAGGAGATGAGAAAGACGAATAAGGTTGATGTCGAGGATTTGACGGTGGAGAATGGGTTGTTTAAGTCGTTTGATGAGATTGTGAGGAGACAGTTGGATCCAATTTGGCATACTTTAGGGAAGAAGACTAAGCAGCTTGTTTCTGATCTTAAGACCTTGAGGAAGTTGTTGGATTATCTAGTCAGGTATGATGCGGTGACATACTTGAAATATTTGGATACACTTAGAGTGTCGGAGAGTTTTCGATCTGTTTGGATATTTGCAGAGGCGAGCTATAAGATATTTGACTATGCAAAGAAACGTGTTTATCATCTAGCGAGATCAGATGGTGTGAAATTGAATGAGTCTAGTAAGGGTGTCAAAAACAAAAAGAAAAAAGTCAAGGGGGATAACAAAGAAACTGAAGAAGCTTCAACCAGTTCAAATCATGGCATAGTTTTGGAGGAAGTCTTGGAAGAAGCACCAAAGTGGAAGGTCTTACGTGATATTCTTGAAGAGGTGGAGGAGGAACGGCAAAAGCAAGGCATGTTGAGGGAAGAAGTGTTGGCTGAAGGCGAAGACACCGACAATGGCATTGTATTAGTGGCATGTAAAGATGAAAGGTCGTGCTTGCAGCTTGAAGAATGCATCACCAACAGTCCGAAAAAGGTCATGCGAGCCGAATGGAAGAAGTACTTACTAAACAAAGTACAACTACGTGATGTAGTTCATAAGAAAAAGAAGCCAAAGGATCCTAAGGGTTTTGGGATTCTTAATGGAGTCACTCCCATATCTCCTGCACAGAATTCTGAAACCAGCGGCATCAATAAGCAGGAGCATGATGCACTTCTGGCAGCAGCTTCAGAACTGCGAAATCTTGCTGAAAATAATCATGTTATCGAAGATGCTCCTCAGTCTGATTTGGGTGGACATGTTCGTGGAAAAGGCAAGAGAAAATTGGGAAATAGAAATGCCCCAATCATTATTGATGGCTCAAGTGTTCAGAATAACAATAAAGAGGAAGTGGCAAGTAGTAAAACTGGGATGTCAGATTCAAAAAATAAAGCCCATATGGGTGAAACTAGTGCTGTCATTGCTGGCAGATTTTGTGAAACCAAACATGGGGGGATATCTGTAGAAGACACGGTTCTTCGGAGGCATACCTGTCCTGATGCAGTAGGAAGAGATGGGAAGCCACTACCACCAGTACATTTTTATGCCCTAGAAAGTGATCAGCCTATACTGGACATATTAAAGCCCTCTATAATCATTGTTTACCATCCAGACATGACCTTTGTAAGAGAAATTGAAGTCTACAAAGCTGAGAATCCCTCAAAAAGGTTAAAGGTTTATTTTATTTTCTATGAAGATTCAACTGAGGTTCAGAAGTTCGAGGCAAGTATACGTAGAGAGAATGGAGCATTTGAATCTTTGATCAGGCAAAAATCTATGATGATGATTCCAGTTGACCGGAGTGGGCATGGTTTAGGATTGAATTCTACCCTAGATTCAGATTTAAATACTACCCAGAACTCGATAACCAGAAAAGCAGGTGGGAGAAAGGGGGTTGATAAGGAAATGCAGGTCATTGTGGACATGAGGGAATTCATGAGCAGCCTTCCAAATATTCTTCATCAAAAGGGAATGCGCATAATTCCGGTGACCCTTGAAGTTGGTGACTATATCCTATCACCATTAATTTGTGTGGAAAGAAAAAGTATTCAAGATCTCTTCCAGAGTTTCACATCAGGTCGTCTATACACCCAGGTGGAAACAATGGTGCGATATTATAAGATACCTGTGCTCTTGATTGAGTTTTCACAGGATAAGAGCTTCTCATTTCAGTCTGCTGGTGATATTGGTGATGATGTGACACCCAATAGCATTATATCAAAGTTGTCGTTACTTGCTCTACATTTTCCCCGACTACGAATAATCTGGTCTCGAAGTTTGCATGCTACTTCTGAAATATTTGCTTCACTGAAGGCAAATCAAGATGAACCAGATGAAACAAAAGCAATGAGAGTGGGTGTTCCATCAGAAGAAGGAATTGTGGAAAATGACGTGAGGGCTGAAAATTACAATACATCGGCTGTGGAGTTTCTAAGACGACTTCCAGGTGTTACAGATTCTAATTATAGAGCCATCATGGATGGGTGTAAGAGTTTGGAAGAACTTGCTCTTCTTCCAGTGGAAAAGCTAGCTGAAATAATGGGTGGTCATAAAGCTGCTCGTACCCTTAGAGACTTTCTAGATGCTAAATATCCCACTTTGTTGTGA 2946 0.4151 MVLQFHEHIITELLEDSNGGLVVLSSGLSLSKLISSLLLLHSSSQGTLLILSPSSTTLNSKINFHLKTLNPQFYQIPAEITADLPIHHRHSLYTSGSVFFITPRILIVDLLTKKLPTSAISGLIILNAHSISETSTEAFIVRIFRSLNRDAFIRVFSDRPQAMVSGFAKAEKTMKCLQIRKLHLWPRFQVYVSQELERDPPDVVDIRVPMSKYMVGIQKAIIEVMDACLKEMRKTNKVDVEDLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAEASYKIFDYAKKRVYHLARSDGVKLNESSKGVKNKKKKVKGDNKETEEASTSSNHGIVLEEVLEEAPKWKVLRDILEEVEEERQKQGMLREEVLAEGEDTDNGIVLVACKDERSCLQLEECITNSPKKVMRAEWKKYLLNKVQLRDVVHKKKKPKDPKGFGILNGVTPISPAQNSETSGINKQEHDALLAAASELRNLAENNHVIEDAPQSDLGGHVRGKGKRKLGNRNAPIIIDGSSVQNNNKEEVASSKTGMSDSKNKAHMGETSAVIAGRFCETKHGGISVEDTVLRRHTCPDAVGRDGKPLPPVHFYALESDQPILDILKPSIIIVYHPDMTFVREIEVYKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQKSMMMIPVDRSGHGLGLNSTLDSDLNTTQNSITRKAGGRKGVDKEMQVIVDMREFMSSLPNILHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFQSFTSGRLYTQVETMVRYYKIPVLLIEFSQDKSFSFQSAGDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATSEIFASLKANQDEPDETKAMRVGVPSEEGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCKSLEELALLPVEKLAEIMGGHKAARTLRDFLDAKYPTLL 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00589 981 MobiDBLite consensus disorder prediction 345 370 - -
Trre9g00589 981 Gene3D - 750 896 - -
Trre9g00589 981 Coils Coil 389 413 - -
Trre9g00589 981 Gene3D - 908 979 - -
Trre9g00589 981 Pfam ERCC4 domain 753 882 IPR006166 GO:0003677|GO:0004518
Trre9g00589 981 MobiDBLite consensus disorder prediction 550 578 - -
Trre9g00589 981 SUPERFAMILY RuvA domain 2-like 912 976 IPR010994 -
Trre9g00589 981 CDD XPF_nuclease_XPF_euk 750 884 IPR047520 -
Trre9g00589 981 PANTHER DNA REPAIR ENDONUCLEASE XPF 1 980 - -
Trre9g00589 981 SMART ERCC4_2 750 830 IPR006166 GO:0003677|GO:0004518
Trre9g00589 981 FunFam DNA repair endonuclease UVH1 908 980 - -
Trre9g00589 981 MobiDBLite consensus disorder prediction 345 366 - -
Trre9g00589 981 SUPERFAMILY Restriction endonuclease-like 747 885 IPR011335 -
Trre9g00589 981 FunFam DNA repair endonuclease XPF 750 894 - -
Trre9g00589 981 MobiDBLite consensus disorder prediction 525 578 - -
Trre9g00589 981 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00589 Trre-Chr9 4216454 4221758 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00589 K10848 - gmx:100812359 1615.13