Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00578 ATGGCTTCTCAAGTTTTTCTTCAGGCTCTGTTTACCCCTAATCAATCTCTTCCGAACAAGCTATGTTTCTCTTCAACTTCTTCAACCGCTTCAACATTCGCTTCACGTAACTTACCGTTGATTTCAACCTCAATTTCACGGCGTTGCAGTCCTCTCATTGCTAAACCTAATTTCATTGTCAGAGCTGATTCCAATCCCGACGCTGCTTCGGCTTCGGATGAAGTTCCTGAAACTGATGATGAACAGGCTTTGGAATCTGATGCTGAAATTGAGGAATTGAAGCCACCTAGACAAACTAGGGTCAAGCTTGGTGATGTTATGGGGATATTGCATAAGAGGGCAATTGCGGCTTCGGATGAAGTGAGGGCCACTCCAGACTTAAGGACTGGTGATATTGTTGAAATCAGATTGGAAGTTCCTGAGAACAAGCGTAGGTTATCCATTTATAAAGGTATTGTCATCTCGAAACAAAATGCTGGTATTCACACGACTATTCGTGTCCGGAGAATTATTGCTGGCACAGGGGTTGAGATAATCTTCCCAATTTACTCGCCAAACATCAAAGAAATCAAAGTGGTAAAACACCGAAAGGTCAGGCAAGCAAGATTGTACTATCTAAAGAACAAGCTTCCCAGATTCTCCACTTTCAAATGA 654 0.4251 MASQVFLQALFTPNQSLPNKLCFSSTSSTASTFASRNLPLISTSISRRCSPLIAKPNFIVRADSNPDAASASDEVPETDDEQALESDAEIEELKPPRQTRVKLGDVMGILHKRAIAASDEVRATPDLRTGDIVEIRLEVPENKRRLSIYKGIVISKQNAGIHTTIRVRRIIAGTGVEIIFPIYSPNIKEIKVVKHRKVRQARLYYLKNKLPRFSTFK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00578 217 PANTHER RIBOSOMAL PROTEIN L19 19 217 IPR001857 GO:0003735|GO:0005840|GO:0006412
Trre9g00578 217 FunFam 50S ribosomal protein L19, chloroplastic 104 216 - -
Trre9g00578 217 NCBIfam 50S ribosomal protein L19 122 209 IPR001857 GO:0003735|GO:0005840|GO:0006412
Trre9g00578 217 Gene3D - 104 215 IPR038657 -
Trre9g00578 217 PRINTS Ribosomal protein L19 signature 111 140 IPR001857 GO:0003735|GO:0005840|GO:0006412
Trre9g00578 217 PRINTS Ribosomal protein L19 signature 170 193 IPR001857 GO:0003735|GO:0005840|GO:0006412
Trre9g00578 217 SUPERFAMILY Translation proteins SH3-like domain 119 217 IPR008991 -
Trre9g00578 217 MobiDBLite consensus disorder prediction 64 97 - -
Trre9g00578 217 MobiDBLite consensus disorder prediction 73 87 - -
Trre9g00578 217 Pfam Ribosomal protein L19 121 210 IPR001857 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00578 Trre-Chr9 4141110 4142956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00578 K02884 - gmx:100500328 261.922