Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00505 ATGAGTACTCCGGAGACGAAATGCGAAGATAGAGATATTGTAATAACAAAAAGTGGTAGAAAAGATGCATCATCATCTTCTTCTTCTTCTAGTGTTCAGAGATTGAAGAAAAAATCACTTCATCCTCCGATCGAAACACATTGGGATCTTCCTACACAAAAAGGAAAGAAAAGATCATCATTCTCCATAAAATCAATGCTGTCTTATCCACTCATGAAACTTGGAAGGACTAAAAGTATTCAAATGATTCTAGAAGGAACTCATGATCCAAATGATGAACAAATTGTTCACAATTTCCGTGAAATGCTTTCTCGTGAGGGTTTATTACCGCCTAAGCACAATGATTATCACACTCTTCTAAGGTTTCTGCGGATGAATGATTTTGATATGACGATTTCCAAAGAGATGTTTCTCAATTATCTCAAATGGCGAAAGGAATTTCGAGTCGACATGATTCATAAGGAATTCAAATTCACAGAATACACAGAAGTGAAGAAATGCTATCCACATGGATACCATGGAGTTGATAGATGTGGAAGACCTGTGTATATTGAGAGAATTGGTATGATAGATATTAACAAACTATGGCAAGTAACCACAAATGAAAGGTTTATAAAGTATCATGTATCAGAACAAGAGAAAACATTGCAAGTAAGATACCCTGCATGTTCATTAGCAGCTAAAAGACACATAGCTTCCACCACAAGTATCTTAGATGTCAATGGAATAGGAATGTCTAATTTCTCAAAGCCTGCAAGATACATCTTTATGGAAATTCAGAAGATCGATAGCAGCTATTATCCTGAGACTTTAAATAAACTCTTCATTGTTAATGCTGGTTCTGGGTTTAAGATGTTGTGGAAAGCGGTGAAGGCATTTTTAGGCGAACGCACAGTAGCGAAAATTCAAGTTTTGGGTTCGAATTATCTCAATGAGTTGCTCGAGGCTATTGATCCAAGTAACTTGCCAACATTTTTGGGTGGCAATTGCACATGCTCTGATTATGGAGGTTGCTTGATGAGTGATCAAGGTCCATGGAAAAATCCAGAACTGTTAGAAATGATTCAGACAGTTTCTGTAACAGAAGAAATTGATGGTACGTGCGAATCCAACAATGCGGTTTCAGAAGGATCTTTGATGCACAATAAGGTTGACATGCAAAATATGAGTTCGGCACTCGAGGAGACAACATGTGTGAGAACATACTCTTCATGTAGGTTAGGATTACAAAAAATTGATGGCCTTGAAGTTAGTCTTGGAGATATCAAGAATAAAATCAAGACATTGGAAGATGCACTTCAAGACACTAAGATGGCATTGAAAGAACTTGCACAACACATTGAACAACAACAGATGTGA 1359 0.3701 MSTPETKCEDRDIVITKSGRKDASSSSSSSSVQRLKKKSLHPPIETHWDLPTQKGKKRSSFSIKSMLSYPLMKLGRTKSIQMILEGTHDPNDEQIVHNFREMLSREGLLPPKHNDYHTLLRFLRMNDFDMTISKEMFLNYLKWRKEFRVDMIHKEFKFTEYTEVKKCYPHGYHGVDRCGRPVYIERIGMIDINKLWQVTTNERFIKYHVSEQEKTLQVRYPACSLAAKRHIASTTSILDVNGIGMSNFSKPARYIFMEIQKIDSSYYPETLNKLFIVNAGSGFKMLWKAVKAFLGERTVAKIQVLGSNYLNELLEAIDPSNLPTFLGGNCTCSDYGGCLMSDQGPWKNPELLEMIQTVSVTEEIDGTCESNNAVSEGSLMHNKVDMQNMSSALEETTCVRTYSSCRLGLQKIDGLEVSLGDIKNKIKTLEDALQDTKMALKELAQHIEQQQM 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00505 452 Gene3D - 73 147 - -
Trre9g00505 452 Pfam CRAL/TRIO domain 168 328 IPR001251 -
Trre9g00505 452 Gene3D - 148 360 IPR036865 -
Trre9g00505 452 SMART CRAL_TRIO_N_2 115 140 IPR011074 -
Trre9g00505 452 MobiDBLite consensus disorder prediction 19 36 - -
Trre9g00505 452 MobiDBLite consensus disorder prediction 38 54 - -
Trre9g00505 452 CDD SEC14 161 329 IPR001251 -
Trre9g00505 452 MobiDBLite consensus disorder prediction 1 56 - -
Trre9g00505 452 SUPERFAMILY CRAL/TRIO N-terminal domain 86 155 IPR036273 -
Trre9g00505 452 PRINTS Cellular retinaldehyde-binding protein signature 320 329 - -
Trre9g00505 452 PRINTS Cellular retinaldehyde-binding protein signature 118 140 - -
Trre9g00505 452 PRINTS Cellular retinaldehyde-binding protein signature 287 306 - -
Trre9g00505 452 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 160 334 IPR001251 -
Trre9g00505 452 SMART sec14_4 160 331 IPR001251 -
Trre9g00505 452 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 35 447 - -
Trre9g00505 452 MobiDBLite consensus disorder prediction 1 18 - -
Trre9g00505 452 Coils Coil 412 452 - -
Trre9g00505 452 SUPERFAMILY CRAL/TRIO domain 160 356 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00505 Trre-Chr9 3656554 3659411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00505 119 325 Acyl Lipid Metabolism Gene Families AT5G47730 30.144 9.27e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00505 K26544 - gmx:100807344 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00505 9 3656554 3659411 Trre9g00505 9 3656554 3659411 ECH