Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00456 ATGGAAATGGCTGCTACGCACTACCATTGCCGTTCAAGCTTGGTTTTGCGTTCAGACTCTTCGCTTCGTTTGGTTCACAATTTGAACCTAAAAAACCCTAAAAATTCATTGCTAGGAACCAAAATTAGGGTTCAACCGTGTTTTATCAGTGTAAAACCCGCCGTATCCGTTTTTCGCCGCCGTCCCTTGGCTGCCACCGTTGCCTTCAGTCTCCCTATCACAAATCCAGAACCTGTTTCACCAGGTCAGGAAATTCCCAAATGGTCTTCTTCAGCTACAAAAGCGATTGCAATGGCTGCAGTGGAAGCTAGAAAACTCAAGCGTACTACTACTGGCACTGAAGCCCTTCTCTTGGGGGTTCTTGTTGAGGGTACTAATCTGGCTAACAAGTTTTTGCGAGCCAATGGAGTTACACTTTTCAAGGTGAAAGATGAAATGGATAAAATACTTGGAGAAGCTGATGTGTTTTCAATAACCGGTGAGCGTCCTCAAATAACTGATGATGCTCAGAGGGCCCTTGATTGGGCTGTTAATAAAAAATTAAAATCAGGTGAAGGCGGGGAAATAACCACAGCGCACATAATTCTTGGCATTTGGTCTGAAGTGGATTCCCCGGGTCACAAGATACTATCTAACCTTGGCATTAATGAAGAAAAAGCTAAAGAGCTTGAAGCCTCAATTTCTAAATCTGTTGTTATTGATGAATGA 708 0.4322 MEMAATHYHCRSSLVLRSDSSLRLVHNLNLKNPKNSLLGTKIRVQPCFISVKPAVSVFRRRPLAATVAFSLPITNPEPVSPGQEIPKWSSSATKAIAMAAVEARKLKRTTTGTEALLLGVLVEGTNLANKFLRANGVTLFKVKDEMDKILGEADVFSITGERPQITDDAQRALDWAVNKKLKSGEGGEITTAHIILGIWSEVDSPGHKILSNLGINEEKAKELEASISKSVVIDE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00456 235 Gene3D - 87 235 IPR036628 -
Trre9g00456 235 Pfam Clp amino terminal domain, pathogenicity island component 99 151 IPR004176 -
Trre9g00456 235 Pfam Clp amino terminal domain, pathogenicity island component 188 225 IPR004176 -
Trre9g00456 235 ProSiteProfiles Clp repeat (R) domain profile. 85 230 IPR004176 -
Trre9g00456 235 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 19 234 IPR044217 -
Trre9g00456 235 SUPERFAMILY Double Clp-N motif 87 222 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00456 Trre-Chr9 3268673 3271581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00456 - - tpra:123908141 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00456 9 3268673 3271581 Trre9g00456 9 3268673 3271581 ECH