Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00416 ATGAATGATCATGACCTCACCACAGAGCACAACGTGCCGTCCGGTCGTATAAAAGCGATAAAATTTGATGTTTTAACTGGAGAAGATATAGAAAAGATCTCCACCTTGGAGATAAATGCACCTGGACAGGTCACTTGTTCTGACTTGGGACTTCCAAATTCCTCTTATGCGTGCACGACATGTGGTTCAAACGATAGAAAGTCCTGTGATGGTCACTTTGGATCAATCAAATTTCCCTTTACCATACTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGCAAAAGATTTGCCCTGCATGTAAATCTATTCGACATGAATTACGGATCAAGCGTACTAAAGCACTCCTTGGATTCAATAATCAGCCTAGAGGTTGCAAATATTGTTGTGGTAATGGTATGGGTCGTTATCCTGCCATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATTATTGTTGAAGTAAATGATGCATCTTTAAATAAGAAAAGAAATTTGGGGCGAGGATTGCCAGCTGATTATTGGGATTTCATCCTTGGAGATGCTCAACAAGATGAAAATCATGTAAATAGAAGGGTTTTATCTCCCGTTCAGGTTGAGAATCTATTGAGTGGTGTTGATCCAAACTTCATTGAAAAATTTATTCCAAGCATGGATTTGGTTGGTCTCGATTGCTTCCTTGTGGCACCAAATTGTCATCGTGTGACAGAAGTTACTCACCGACTTTCTGGGGGATATCCTTTGAGTTTTGATAACAGGACTAGGGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAACTAAGTTCTCGTGTTTTGGATTGCCTGAGGTTTTCCAAGATAAATCCTGATAGAACTCCAATTACTATTTTTACCGAGTTGCAACAAAGAAGGGTTGGAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATGAAAGATGTTGTTCTTGGAAAACGCAATGATTGTTCATTCCGTACCGTGGTTGTTGGTGATCCAGACCTTGAGCTTAGTGAAATTGGTATACCTTGTCAAATTGCAGAAGGTTTGCAGGTTTCTGAGTGTGTGAATAGGCAGAATAAGCAAGGTTTGCTTTATTCTTGTGAGCTGCGTTTGTTAGAGAAGGGACAGATAAATGTTCGCAGAAAGGGTAATCCAGTTGTTCTGTATAAAAAAGAAGATTTGCAGATAGGAGACATATTTTATCGGCCTCTTGTTGATGGGGACACAGTGTTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCTTTCATGGTTAGGGTTCTTCCAATTACTTCTGTTGTTTCTATTAACCCACTCTGTTGTTCACCTCTTTGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCTGTTGGTGCAAGAGTGGAGCTTAATGAGCTGGTTGCTTTGGATAAGCAACTGATTAATGGGCAAAGTGGTACAAATCTGCTTTCACTTTGTCAGGATAGTTTAACTGCTGCATATTTGCTGTTGGAAGATGGGGTCCGTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGCTTTGTGATAGAAAATTAATACCTCCTGCTGTTGTAAAAGCTTCTTCAAGCAATACCTCGTTTTGGAGTGGCAAGCAATTTTTCAGCATGCTCTTGCCTTCTAATTTTGACTATGATTTCCCTTCAAATGATGTTATTGTTAGTGACGGGGAGCTGATATCTTGTTCTGAGGCTTCTGGGTGGTTACGTGATTCAGAGAACAATATTTTCCAAAGTCTTGTGGAGCATTTTCAAGGGAAGACTTTGGATATATTGCACGGTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACAGGGTTGAGCGTTTCCCTCTCAGATTTGTACCTTTCTTCCGATTCCTATGCTCGGAAAAACATGATGGAGGAAATCTCCCATGGCTTACGAGAAGCAGAGAAGGCTTGTGATTTCAACCAGTTATTGGTAGATTATTATTGTGATTTTCTTTCAAGAAGTCTAGAAGAGAATGGAAAATTTGTGACTGTGGACGTAGATCGTCTTCATTATGAAAGACAAATATCTGCTGCTCTAAGTCAAGCGTCAGTTGATGCTTTTAGACAAGTGTTTCGGAATATTCAGAGTTTAGCAGATAAATATGCGTGCAAGGACAATTCTTTCCTTGCTATGTTTAAGGCTGGAAGTAAGGGTAATTTACTGAAATTAGTGCAACATTCCATGTGCCTTGGGCTGCAACATTCTCTGGTCCGATTGTCATACAGAATTCCCCGTGAACTCTCATGCGCTGGTTGGAACAGTCAAAAGGGGATTCATTCGATGGAGATGTTTTCTGAGTCTATTGAACCAGGCCAGTCTTTCATTGCTCATGCTGTGGTTGAAAGCTCTTTTCTTACAGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGGACATTGACCAGAAGACTTATGTTTTTCATGCGTGATATGTATGATGCATATGATGGATCAGTGAGAAACTTGTATGGTAATCAACTGATTCAGTTTTCTTATGATGCTGAAAAGGATTTAGCTTGTGATAGCTATCTTCGAGAAGATATTATAGGTGGTGAACCAGTCGGAGCGCTTTCTGCCTGTGCAGTTTCTGAGGCTGCATACAGTGCTTTGAGTCAACCTATTAGTCTACTTGAAGCATCACCTTTGCTGAATTTAAAAAATGTTCTGGAGTGTGGTTCAAAGAAAAAAGGGGGTGATCAGACCTTATCTTTATATTTGTCTGAGAAAATTGGTAAAAAGAAAAATGGGTTTGAGTATGCATCTCTAGAAGTTAAAAATTATTTGGAAAGATTGATGTTCTCAGACATTGTTTCTACTGTCATGATAATATTCAGTCCACAGTCTTGCAATCTTGGAAAATACAGTCCCTGGGTTTGCCATTTTCATTTAGACAAGGAAAATGTAGCAAGAAGAAATTTCAGAGTGCATTCTATCATTGAGTCTATTTACCGGGGATATGACTCCTTAAGAAAAGACTCAAAATTCACTCTTCCCAATTTAAAAATATCAAGCAACAGGAAATGTTGTGTAGATAACATGGTTAAGGAAGGTGGAGAAACCTCTGATAAGGAAAAAGACAGTCAAGATTGCATCACCGTCACAATTGTTGAAGATTCAACGAATTCTCTACAACTGGATGCTGTTCGGAATATAATGGTACCTTTGCTTCTGCGAACAGCTATAAAAGGATTTTCGGAGATCAAGAAGGTTGACATTCTCTGGAAGGATCGGTCAAAAGTATCGAATTCTTTTAATGGTTCTTCTGGTGAACTATACTTAAAGGTTACTATGGCCAGCGACAATGACAGCGGTACATTCTGGGGTTCACTGATAAATCATTGTCATAGAATAATGCCGTTGATTGACTGGACACGAAGTCATCCCGATAACATTCACCATTTCTGCTCAGCCTTTGGAATTGATGCAGGCTGGCAGCATTATCTGCATAATTTATCATCTGCAACATCTGATACTGGCAAGTCGATCCTTCCTAAGCATCTGCGTCTTGTTGCCAATAGTCTTTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACGGCAAAGAAAACATGCATCTGTTTCATCGCCCTTCGTGCAAGCGTGCTTTTCTAATCCTGGCAGTTCCTTTTTAAAAGCTGCGAAGTCTGGAGTCATGGATAATCTCCAGGGCAATCTAGATGCATTGGCTTGGGGAAACTGTCTGCCCATGGGTACAAGTGGACAGTTTGATATCATATACTCAGAGAAGGTACAAGAGCTTGATAAGTCTGTAGATGTCTATGGTCTGCTAGAAACCAGTTTTGACCAAATAGACCAAGAGATTAATACCCCTCAATCTCAGAAATATTCATACAGCAACTGCAATTCAGACTTTAGGTATAAAAAAGGTGGTTACATCCGGAAAGAGCCGAAGGAGTGGAAAAGTGCTGTAAGAAGTTTCATAACTGTCAATGATATTTGGAAGCTTACTACTGCATCAAAGTTCATACTGAAAAAGTATCCAATTGATGAGATACTCAGTGAGAAGGACAAGTTAACCATAATGAAGGTTTTGCATTTTCATCCATGTAAAAATGAGAAGTTTGGCTCTGGGCCACAAGACATAAAGGTTGGATGGCATCCCAAGTTTACGGATAGCCGTTGTTTTTTTATAATACGAAAGGATGGGACTATTGAAGATTTTTCATACCGCAAATGTATTCTTGGTGCTCTTGATATTGTTGATCCGGAAAAGTCAAAGATCCAAGAGAAGAAATGGTCGGAAAATAATGACATGGAAGCTAAAAAATGGTCCGGAAATGATGGCATGGAAGCTAAAAAATGGTCGGAAAATTATGACAAGGAAGCTAAAAAATGGTCGAAAAATTATGACAAGGAAGCTAAAAAATGGTCAGGCAATGGTGACATGGATGTGACTGTCATTTGA 4560 0.3956 MNDHDLTTEHNVPSGRIKAIKFDVLTGEDIEKISTLEINAPGQVTCSDLGLPNSSYACTTCGSNDRKSCDGHFGSIKFPFTILHPYFMAEIAEILQKICPACKSIRHELRIKRTKALLGFNNQPRGCKYCCGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDASLNKKRNLGRGLPADYWDFILGDAQQDENHVNRRVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLDCFLVAPNCHRVTEVTHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPITIFTELQQRRVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLELSEIGIPCQIAEGLQVSECVNRQNKQGLLYSCELRLLEKGQINVRRKGNPVVLYKKEDLQIGDIFYRPLVDGDTVLINRPPSIHQHSMIAFMVRVLPITSVVSINPLCCSPLCGDFDGDCLHGYIPQSVGARVELNELVALDKQLINGQSGTNLLSLCQDSLTAAYLLLEDGVRLNVYQMQQLQMLCDRKLIPPAVVKASSSNTSFWSGKQFFSMLLPSNFDYDFPSNDVIVSDGELISCSEASGWLRDSENNIFQSLVEHFQGKTLDILHGAQKALCEWLSMTGLSVSLSDLYLSSDSYARKNMMEEISHGLREAEKACDFNQLLVDYYCDFLSRSLEENGKFVTVDVDRLHYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGIHSMEMFSESIEPGQSFIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGSVRNLYGNQLIQFSYDAEKDLACDSYLREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKNVLECGSKKKGGDQTLSLYLSEKIGKKKNGFEYASLEVKNYLERLMFSDIVSTVMIIFSPQSCNLGKYSPWVCHFHLDKENVARRNFRVHSIIESIYRGYDSLRKDSKFTLPNLKISSNRKCCVDNMVKEGGETSDKEKDSQDCITVTIVEDSTNSLQLDAVRNIMVPLLLRTAIKGFSEIKKVDILWKDRSKVSNSFNGSSGELYLKVTMASDNDSGTFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYLHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGVMDNLQGNLDALAWGNCLPMGTSGQFDIIYSEKVQELDKSVDVYGLLETSFDQIDQEINTPQSQKYSYSNCNSDFRYKKGGYIRKEPKEWKSAVRSFITVNDIWKLTTASKFILKKYPIDEILSEKDKLTIMKVLHFHPCKNEKFGSGPQDIKVGWHPKFTDSRCFFIIRKDGTIEDFSYRKCILGALDIVDPEKSKIQEKKWSENNDMEAKKWSGNDGMEAKKWSENYDKEAKKWSKNYDKEAKKWSGNGDMDVTVI 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00416 1519 FunFam DNA-directed RNA polymerase subunit 492 630 - -
Trre9g00416 1519 SMART rpolaneu7 224 512 IPR006592 GO:0003677|GO:0003899|GO:0006351
Trre9g00416 1519 CDD RNAP_IV_RPD1_N 25 861 IPR040403 -
Trre9g00416 1519 Gene3D RNA polymerase II, clamp domain 7 123 IPR044893 -
Trre9g00416 1519 Pfam RNA polymerase Rpb1, domain 3 488 636 IPR007066 GO:0003677|GO:0003899|GO:0006351
Trre9g00416 1519 Pfam RNA polymerase Rpb1, domain 1 16 106 IPR007080 GO:0003677|GO:0003899|GO:0006351
Trre9g00416 1519 Gene3D RNA polymerase ii 358 410 - -
Trre9g00416 1519 Gene3D - 321 491 - -
Trre9g00416 1519 Gene3D - 1357 1447 - -
Trre9g00416 1519 Pfam RNA polymerase Rpb1, domain 4 704 763 IPR007083 GO:0003677|GO:0003899|GO:0006351
Trre9g00416 1519 Pfam RNA polymerase Rpb1, domain 2 325 482 IPR000722 GO:0003677|GO:0003899|GO:0006351
Trre9g00416 1519 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1293 - -
Trre9g00416 1519 Gene3D RNA polymerase Rpb1, domain 3 492 638 IPR042102 -
Trre9g00416 1519 Gene3D - 640 814 IPR038120 -
Trre9g00416 1519 Pfam Protein of unknown function (DUF3223) 1373 1445 - -
Trre9g00416 1519 PANTHER DNA-DIRECTED RNA POLYMERASE 21 1290 IPR045867 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00416 Trre-Chr9 3015992 3025221 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00416 K16250 - gmx:100796185 2140.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00416 9 3015992 3025221 Trre9g00416 9 3015992 3025221 ECH