Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00415 ATGAGAGGTTCGAAGCGTTTGGCTATATCGGAACCAAACCAGGCTAATAACAACGAAACGACATTTCGGAATAAAAGAATAATGGAAGGATCTCTCTTTGATGTCCATAGGGCTGAACCATCCCAACAACTGATGGGGGAAACACCCCAATTGGATATGAAACGAGCAGAGTCATCCCAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGCTGGGTTCAAACACAATTGAAGAATCATCCTGATGAGCTTTGGGAAGATGGTGTCAGAGATTACTTAGACCATGCTACAAGCATTATGGAAAAATTTAGTGATGTTGTCAACTGGCTCAAAGCAAATGCCACAAAGGCAGAAAATTCTACTCCTGGTGCTGGTATCGGTGCTTCTTTTGGTGTGAAAAAGTTTTTGCCTGAAGTAACAATCAATGAAAATAAAAATTTTGGAGAAAAAACAGGATCTCCTCCTGTTAGTGCTGCTACAAATTTTGCTACAAAGACAGAAAATTCTACTACCGGTGCCGGTGCTTCCTTTGCTGGGAATAAGTTTTTGCCTGAAGTAACAAACACACAAAATAAAATTTTTGGAGAAAAAACCGGATCTCCTCCTGTTAGTAGTGCTACAAATTTTGCTAGTCCGTGGAGCCCTGGCATATTTATACCCAATCAAAACATTTTTACATTTGGAGGGAACAACACTTCAGGAAATCAAAGTTCAGCCCCCTCCAACTCCAATCACAACGCTTCAGATGGTGTGGATGCTGAAAATGAGGAAGAGCAGCCCAGCAGCCCATCAGTGAAGAAGTCAGAAGAGAAAGGTGTAGTAGTTGTGCATGAAGTGAAGTGCAAGCTTTATGTGAAGTCAACTGACCCAACAGATAAGGATGTATGGAAAGATAAAGGAATGGGACATCTGTCCATTAAATGCAAAGAGGGGGTCGCCAAGGCTACCAAAGAGTCCAAACCTACAATTATTGTTCGGAATGAGGTAGGAAAAATTCTTCTCAATGCCTTGTTGTATCATGGAATCAAGACAAATCCACAGAAGAATTCTCTTGTTGCGATATTTCATACTTCGGGTAATGCTGATGGTAATGGTGGAGATAATGATAGTGTTGTTGCACGTACATTTTTGATTCGGATGAAAACAGAAGATGATCGAAATAAACTTGCTTCAACTATTCAAGAATATGCTCCAGCATCTTGA 1206 0.4071 MRGSKRLAISEPNQANNNETTFRNKRIMEGSLFDVHRAEPSQQLMGETPQLDMKRAESSQQHVRALNTQFASWVQTQLKNHPDELWEDGVRDYLDHATSIMEKFSDVVNWLKANATKAENSTPGAGIGASFGVKKFLPEVTINENKNFGEKTGSPPVSAATNFATKTENSTTGAGASFAGNKFLPEVTNTQNKIFGEKTGSPPVSSATNFASPWSPGIFIPNQNIFTFGGNNTSGNQSSAPSNSNHNASDGVDAENEEEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPTDKDVWKDKGMGHLSIKCKEGVAKATKESKPTIIVRNEVGKILLNALLYHGIKTNPQKNSLVAIFHTSGNADGNGGDNDSVVARTFLIRMKTEDDRNKLASTIQEYAPAS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00415 401 SMART ranbd_3 258 397 IPR000156 GO:0046907
Trre9g00415 401 Gene3D - 188 400 IPR011993 -
Trre9g00415 401 MobiDBLite consensus disorder prediction 229 271 - -
Trre9g00415 401 FunFam AT4g11790/T5C23_220 162 400 - -
Trre9g00415 401 PANTHER RAN BINDING PROTEIN 21 398 IPR045255 -
Trre9g00415 401 MobiDBLite consensus disorder prediction 229 250 - -
Trre9g00415 401 ProSiteProfiles Ran binding domain type 1 profile. 268 401 IPR000156 GO:0046907
Trre9g00415 401 Pfam RanBP1 domain 266 396 IPR000156 GO:0046907
Trre9g00415 401 CDD RanBD_NUP50 270 398 - -
Trre9g00415 401 SUPERFAMILY PH domain-like 268 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00415 Trre-Chr9 3001799 3007153 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00415 K14295 - gmx:100816975 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00415 9 3001799 3007153 Trre9g00415 9 3001799 3007153 ECH