Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00365 ATGAGGTACGTGAAACCCTTGGAGTTGTTTCGTGATTTGATGAAAACAACACAGAAAGAACGCGGAAGATTGATGGGTTTAGATGTTGGTGATAAATATGTTGGTCTCGCTCTTTCTGATTTTGATAACAAAATTGCTTCACCTTTCAGTGTTCTCGTCAGGAAGAAGAACAATGCTGGTTTAATGGCTGATGATTTTAAGAATCTGATCTCCACATATTCCTTGAAGGGCTTTGTTATTGGCCTTCCTTATAGCTGGCATCTGGTGTCTTCCGACGCTTGTCAAGTGAATGTCTTCATTGATAACCTCAATAGAACAAAGATGCTTGAAGGTCTAAACTATACGTGCTGGAATGAGAGCTTCTCGTCAAAGAGTGTGGACACAATAGTAAAGTCTTTGAACTTGAAACATCCAGTTCATTCCAAAACTATGCTAGACAAGTTTGCTGCTGTAGGAATACTTCAGGGGTACCTGGACTTTGCTAACAAAAAAACAAAGCTGATAACACCGGAGGTAAGATTTCTTAATAGTTTAAGTTCACAAGCATGCTAA 552 0.3913 MRYVKPLELFRDLMKTTQKERGRLMGLDVGDKYVGLALSDFDNKIASPFSVLVRKKNNAGLMADDFKNLISTYSLKGFVIGLPYSWHLVSSDACQVNVFIDNLNRTKMLEGLNYTCWNESFSSKSVDTIVKSLNLKHPVHSKTMLDKFAAVGILQGYLDFANKKTKLITPEVRFLNSLSSQAC 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00365 183 Coils Coil 180 183 - -
Trre9g00365 183 Gene3D - 22 168 IPR037027 GO:0006139
Trre9g00365 183 FunFam Putative pre-16S rRNA nuclease 21 169 - -
Trre9g00365 183 SMART rnase_8s 22 126 IPR006641 GO:0006139
Trre9g00365 183 CDD YqgF 24 159 IPR005227 GO:0006364
Trre9g00365 183 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 1 171 IPR005227 GO:0006364
Trre9g00365 183 Pfam Holliday junction resolvase 23 159 IPR005227 GO:0006364
Trre9g00365 183 Hamap Putative pre-16S rRNA nuclease [yqgF]. 22 162 IPR005227 GO:0006364
Trre9g00365 183 SUPERFAMILY Ribonuclease H-like 22 161 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00365 Trre-Chr9 2616053 2618125 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00365 - - gmx:100305864 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00365 9 2616053 2618125 Trre9g00365 9 2616053 2618125 ECH