Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00343 ATGGCTGCATCATCTTCTCTAACAGCATATTCCTATTCCTTCCCATTCACAACTTCCACCAAATCTTCTTCTCACCCAATTCCCTTCTCTTCTTGTTCTTTTCCTCTTAAACATCATACCCTCCTTCCCAATCTCAAATCAGGAGCTGCTGCTGCTGCTACACCCACAACCTCAATTGAAGTCGAAAAATCCCCAATCTCTGCTACTCCTTCAAAGGTTCTTCCTTTTCGTGTTGGGCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCCTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGTTGTGAGGCTCATTCTGATGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGCCAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTCGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAATTAAGCCCACACAAGGAAGCTATCAAGGCCAATTTATCTGCATTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGACAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA 699 0.4177 MAASSSLTAYSYSFPFTTSTKSSSHPIPFSSCSFPLKHHTLLPNLKSGAAAAATPTTSIEVEKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00343 232 CDD MECDP_synthase 77 229 IPR003526 GO:0008685|GO:0016114
Trre9g00343 232 SUPERFAMILY IpsF-like 75 231 IPR036571 GO:0008685|GO:0016114
Trre9g00343 232 FunFam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 73 232 - -
Trre9g00343 232 Pfam YgbB family 76 229 IPR003526 GO:0008685|GO:0016114
Trre9g00343 232 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 5 232 IPR003526 GO:0008685|GO:0016114
Trre9g00343 232 NCBIfam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 77 231 IPR003526 GO:0008685|GO:0016114
Trre9g00343 232 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 76 231 IPR003526 GO:0008685|GO:0016114
Trre9g00343 232 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 110 125 IPR020555 GO:0008685
Trre9g00343 232 Gene3D - 73 232 IPR036571 GO:0008685|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00343 Trre-Chr9 2464620 2467327 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00343 K01770 - gmx:100306378 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00343 9 2464620 2467327 Trre9g00343 9 2464620 2467327 ECH