Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00341 ATGATATACGGTGCTTGCTCCAAGTTTTTTCACATCGAGTACTTAGGAGTTAAGAGAGCCATCATTGGGTGCTGTTTGTTGATCAGTGGTTTGATCTTGTGGTTTGCTATGGACTCTAAGAATAATGGACTTTTAGCCATAATGAATTCAGAGGAAATAATTAGTAAAAGTTCCTCAGCTGATTATGATTATGTAGATGCTCTTGGCAAAGCCATCTTGTTTTTTGAAGGACAAAGATCAGGGAAATTGCCTAAAGACCAAAGAGTGAAGTGGAGAGGAGATTCAGCACTCTCTGATGGCAAGTCTCAAAATGTGAATTTGGTTGGAGGATACTACGACGCCGGCGGTAATGTGAAGTTTGGATGGCCAATGTCATTTACAGTCAGTTTATTGAGTTGGGCTGCTGTTGAATATGAAAGTGAGATTTCTTCGGTGAACCAACTTGATTATCTCCACAATGCTATTCGTTGGGGCGCAGATTTTATAATTCAAGCTCACACTTCTCCAACCACACTCTTTACACAGGTGGGAGATGGAAATAAAGATCATCAATGTTGGGAGCGTCCAGAGGACATGGATACACCGAGAACACTTTACAAGATTGATGCTAATTCCCCTGGAACTGAGGCTGCAGCTGATTCTGCTGCTGCTCTTTCTGCTGCTTCAATTGTTTTTAAGAAAAAAGATACCAAATATTCGTCGAAGCTGTTAAGCCAGTCCAAATCTACAAGTATAGAGGTTCTTACTCGGGTTCTTGTCCATTCTACTGCTCATACTCCGGCTACCATGGCGAGTCGAGAAAACAAGTACTTGAGGTACATCATAGATAACCAAGGTTGGAGTCAAGCAGTGACTGAATTAAGCTGGGATAACAAATTTGTTGGAGCTCAAACATTACTCACACAGGAATTCTATGGTGGAAAAAAAGACTTAGCCAAGTTTCAGAGTGATGCTGAATCAATTATATGTGCATTGATGCCAGGAAGCAACTCTATACAAATTAACACAACTCCTGGCGGGCTTCTGTATACTAGAGATAGTAGTAATTTGCAATATACCACAACCTCAACCATGGTGCTATTCATTTTCTCCAAAATCCTAAACAAAAACCATATTGATCAAATTCATTGTGGCTCTACCAATTTCACCTCCTCCGAAATTAGAGCCTTTGCAAAATCGCAGAAATCATTTCACCTTTCTCCGATGGAAGATCTTCGAAATTCTTCGTCGCTAAATTTTTTCACCGATCAAGAACTTTGTTACGCCGATATTGTTCCTCCTTCTCAGGTTCGAGCTAGAATTGAAGTCTCAGTTCTCAGTTTCCTCAAAATATTGAATGCATCAAACCCTTCCATCTCAGATTTGCCTTTGATTCAAAGAAAAATGAGCAACAGTCGAGTGAATCATGGCCTGTTGACCGAATTATCATACATTTTTCTCTCCAATTCGGTATCGACAAGGTCGCTTATGAGACCTAATGCAGCAAAGGCCTTTGTTAGGGTGTGGAAGGTGATGGAAATGTGCTATCAGGTATTGCTTCAGGAAAAGCGTGTCACACAGAGGGAACTCTTCTACAAGCTGCTGTGTAATTCGCCGCATCTGTTTCCTTCTCAAAAGGATGTCAATAGGACAATCCAAGATCTTGTAGCGTTGCTTCGGTGCAGCAGATACAGTCTTGGAATCATGGCATCTAGTCGAGGACTCATTGCCGGCCGTCTGATTATGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTGTCTGTGGATCTTCAGGACATACAATTTCTGGTGACTTGAATTTGTTAGACAAATTGATTCTAAATACAGATGCACGTTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTGCTGAAGATAGGTTTTTTAATCAAATTCCGAGCATTCTTATCACGGCTAAAGGTTACCCAGATATGGCCACAAGATTTCTTCTTCATCGAATCAGTAGAGCATTTCCAGACTTGCCAATTTTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATACTATGCACCTTTAAATTTGGAAGTGTAGGAATGGGCTTAGAGTCATATAGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCATGCTGCCTGATCAATCTTTCGTTCCACTGAAGTCAAAGGACCTACAAATTGCTCAAAGCTTGATGTCCTCGAGAATCATACAGGAGAATTACAAGGAAGAGGTTGCCTTGATGGTTCAGAGTGGCAGAAGAGCTGAAATAGAAGCCCTATACTTTCATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATATATAA 2355 0.4098 MIYGACSKFFHIEYLGVKRAIIGCCLLISGLILWFAMDSKNNGLLAIMNSEEIISKSSSADYDYVDALGKAILFFEGQRSGKLPKDQRVKWRGDSALSDGKSQNVNLVGGYYDAGGNVKFGWPMSFTVSLLSWAAVEYESEISSVNQLDYLHNAIRWGADFIIQAHTSPTTLFTQVGDGNKDHQCWERPEDMDTPRTLYKIDANSPGTEAAADSAAALSAASIVFKKKDTKYSSKLLSQSKSTSIEVLTRVLVHSTAHTPATMASRENKYLRYIIDNQGWSQAVTELSWDNKFVGAQTLLTQEFYGGKKDLAKFQSDAESIICALMPGSNSIQINTTPGGLLYTRDSSNLQYTTTSTMVLFIFSKILNKNHIDQIHCGSTNFTSSEIRAFAKSQKSFHLSPMEDLRNSSSLNFFTDQELCYADIVPPSQVRARIEVSVLSFLKILNASNPSISDLPLIQRKMSNSRVNHGLLTELSYIFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQVLLQEKRVTQRELFYKLLCNSPHLFPSQKDVNRTIQDLVALLRCSRYSLGIMASSRGLIAGRLIMQEPGKEAVDCSVCGSSGHTISGDLNLLDKLILNTDARYVIIVEKHAIFQRLAEDRFFNQIPSILITAKGYPDMATRFLLHRISRAFPDLPILALVDWNPAGLAILCTFKFGSVGMGLESYRYACNVKWLGLRGHDLPMLPDQSFVPLKSKDLQIAQSLMSSRIIQENYKEEVALMVQSGRRAEIEALYFHGYDYLGKYIAKKIVQSDYI 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00341 784 Pfam Glycosyl hydrolase family 9 64 242 IPR001701 GO:0004553|GO:0005975
Trre9g00341 784 Pfam Glycosyl hydrolase family 9 264 394 IPR001701 GO:0004553|GO:0005975
Trre9g00341 784 Pfam Type IIB DNA topoisomerase 496 561 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Trre9g00341 784 FunFam Meiotic recombination protein SPO11-2 420 564 - -
Trre9g00341 784 CDD TOPRIM_TopoIIB_SPO 612 769 IPR034136 -
Trre9g00341 784 Gene3D - 424 564 IPR036388 -
Trre9g00341 784 SUPERFAMILY DNA topoisomerase IV, alpha subunit 495 784 IPR036078 GO:0003677|GO:0005694
Trre9g00341 784 Gene3D - 256 410 IPR012341 GO:0005975
Trre9g00341 784 Gene3D - 565 784 - -
Trre9g00341 784 PANTHER ENDO-1,4-BETA-GLUCANASE 46 242 - -
Trre9g00341 784 SUPERFAMILY Six-hairpin glycosidases 61 397 IPR008928 GO:0005975
Trre9g00341 784 Gene3D - 60 244 IPR012341 GO:0005975
Trre9g00341 784 PRINTS DNA topoisomerase VI subunit A family signature 614 631 IPR002815 GO:0003677|GO:0003918|GO:0005694
Trre9g00341 784 PRINTS DNA topoisomerase VI subunit A family signature 638 659 IPR002815 GO:0003677|GO:0003918|GO:0005694
Trre9g00341 784 PRINTS DNA topoisomerase VI subunit A family signature 538 555 IPR002815 GO:0003677|GO:0003918|GO:0005694
Trre9g00341 784 PRINTS DNA topoisomerase VI subunit A family signature 556 571 IPR002815 GO:0003677|GO:0003918|GO:0005694
Trre9g00341 784 PRINTS DNA topoisomerase VI subunit A family signature 671 687 IPR002815 GO:0003677|GO:0003918|GO:0005694
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00341 Trre-Chr9 2450151 2460167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00341 63 403 Glycoside Hydrolase AT4G23560 60.942 5.47e-135 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00341 K10878 - gmx:100784732 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00341 9 2450151 2460167 Trre9g00341 9 2450151 2460167 ECH