Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00339 ATGGAAGCGAACGCTTCCTTGCCGTTGCCGACGCTACCAAATTCGGGTGCATTGACTGGAATCGTAAACCCAGCGTCACCATCTTCCGTCAACTTGTATAGAATCACCAAAGTTCTGGAGCGTTTGGCTACACACTTTCATCCCGGCATGCGAAGCGATTCTTTCGAATTTTTTACCCTATGCCTCTCCCTTTCTCGAGGGATTGATTATGCACTTGCCAACGGCGAAACTCCGTCGAAAGCTAATGAATTGCCTATGTTGATGAAACAGATGTATCAAAGAAAGACCGATGAACTATCACTTGCAGCTGTGATGGTTTTGATGATATCTGTGAAGAATGCCTGTAAAATTGGATGGTTCCAGAAGAAAGAGTCGGAAGATCTTTTAACTATTGCTGACGAGATAGGAAAGATCTACTGCACCCTGGGAAATGTGAGTGCCGGACCTAGTGCTAGCCATTCTACAGTATTAGCTATAATGGAAAGGTTCTATCCAAAATTGAAATTGGGTCCAATAATTGTGTCAATCGAAGCCAAGCCTGGATATGGAGCTTCTGCGGTTGACTTCCATATCACAAAGACTAATGTTCAATCAAATAAAAAAATTTCGTTATTGGTGGCACAAATTGATAACATTGAAACATCTGCATGCCTCGTCAGCCCTCAGCACGTGAATTTTCTCCTGAATGGTAAAGGAATTGACACAAGGACTAGCTTACGAATGGATCCTGGACCACAGATGCCCACTAGTGTGACTAGTATTCTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGTCAGTTTGACGGTCATTATATTATACTTGTTGCCTATATGAATGTTGCATCCTTGCCTGAGCATCCAGTTCTTCCTCCAGATTATATTCAGCCTGCTGTTACTTCTGTTGATTCAGATGCAGATGTTATCGAGGGGCAGTCGCGTATCAAGCTTAATTGTCCGATAAGCTTTACACGTATCAAGACCCCTGTTAAAGGTCGTTCATGCAAACATTTCCAGTGCTTCGACTTTGACAATTACCTTAAAATAAATTCCAAGAGGCCATCCTGGCGCTGCCCCCATTGCAATCAGTCTGTTAGCTATACAGAAATTCGTCTAGACAGAAAAATGATTGAGATCCTGGAAAAAGTTGGAGAGAACATTGTGGAAGTGAATGTCAATGCTGATGGATCGTGGAACAACTTGGAGAATGATCATGATGTGGATAAAATACAGAATAAGGCCCACAATTGTGAAAAGGAACAGACTGAACCACAAGAATCTACTAGTTCCCCTGATACCATTCCCAATGTTGTGGACCTCACCAACAAAGATAATGATTTGGACATAATGGACATTTGTGAAACTGAAGATAGAAAGCCTTCTCTTCCTACTGGTGTTCAAATAGAAGACAGCTTTTGGGCTGGACTTTATCTTGCCAACAGTAGGCCTGATACCCTTTCAGTTGGTGCCGACCTTCCTGTTCTGGCTGGTGCTGTTTCTCCTGTATTTAATCAAGCAGCTGAGGGTCATGACAATATTCCTGCCATGAATTCTGCCATGCATAACCAGTTTTCGGCACAGAGTAATTTACAGCTGATGAGTTATGTGAATTCAGCTCTTAACGAGTATGGGAGGTCCTCCTCAGCACCGAGACATATTCAGAGGACTCCTGTAGCTATTCAGGCCCTCCCAGTCCAATCTCAGACATTAGGACTGCAGCAAAATTCAGTAACTAATTTGGATTCCTTGATAACCAGCAGTTCGTCTGCTGCTCATGTTTCTTTGTCCAACCCCACCTCTGCAGATACTTACAATGCCATACTGAGTGATGCAGAAAGACAGCAACATTTTTCTCGAACCCCTCTGAATATGCCTCAGGTCTCAGCAGCAACACAGATCCGAGTGCCAACAGTTAATATGTCAACCCCAACTCATAACCAAGTGCCACCAGCTAATATGTCAGCCGTAACTCATAACCGAGCACCAAGTCAGTTGCAAAACCCACAGTACAAAACAGGTATGCTGAATGAATTTAGTAATTCACACCTGCAGCAAGCTCTGAATTCCTATTCACACCAACCAATGCAACCATTGAATACACAACTGCCTCACACCCAGCAAGGGGGTTCACAAGCTAATGCAGCCGGACCAGCAGCAAATAGCCAACAAGCCAGGGTTATGGCTTCATCACATGCTGCCAGACAAGGAGAGCAAAGAGGACCACCAGTACAGGCAGTTTCTAGGACCGACGAATTGTTCAATTCACAACCAGATCAGAATTGGCGTCCTACTCGAATGCGTGGAAGTCTTTCAGGTCAGCAGCTTACTGATCAAGTTAGGCAGAAATTAATTATGCCATCATCACACGAAGTTCAAAGTTCAAGACCACAAGCTCCACAACCAGGCCGAACATCGTCCCCACTGGATGTGCTCATTGCTAACAGTAGAAATGCTCACAATCCTTCAAGGCCGTAA 2475 0.4392 MEANASLPLPTLPNSGALTGIVNPASPSSVNLYRITKVLERLATHFHPGMRSDSFEFFTLCLSLSRGIDYALANGETPSKANELPMLMKQMYQRKTDELSLAAVMVLMISVKNACKIGWFQKKESEDLLTIADEIGKIYCTLGNVSAGPSASHSTVLAIMERFYPKLKLGPIIVSIEAKPGYGASAVDFHITKTNVQSNKKISLLVAQIDNIETSACLVSPQHVNFLLNGKGIDTRTSLRMDPGPQMPTSVTSILKFGTNLLQAVGQFDGHYIILVAYMNVASLPEHPVLPPDYIQPAVTSVDSDADVIEGQSRIKLNCPISFTRIKTPVKGRSCKHFQCFDFDNYLKINSKRPSWRCPHCNQSVSYTEIRLDRKMIEILEKVGENIVEVNVNADGSWNNLENDHDVDKIQNKAHNCEKEQTEPQESTSSPDTIPNVVDLTNKDNDLDIMDICETEDRKPSLPTGVQIEDSFWAGLYLANSRPDTLSVGADLPVLAGAVSPVFNQAAEGHDNIPAMNSAMHNQFSAQSNLQLMSYVNSALNEYGRSSSAPRHIQRTPVAIQALPVQSQTLGLQQNSVTNLDSLITSSSSAAHVSLSNPTSADTYNAILSDAERQQHFSRTPLNMPQVSAATQIRVPTVNMSTPTHNQVPPANMSAVTHNRAPSQLQNPQYKTGMLNEFSNSHLQQALNSYSHQPMQPLNTQLPHTQQGGSQANAAGPAANSQQARVMASSHAARQGEQRGPPVQAVSRTDELFNSQPDQNWRPTRMRGSLSGQQLTDQVRQKLIMPSSHEVQSSRPQAPQPGRTSSPLDVLIANSRNAHNPSRP 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00339 824 CDD SP-RING_PIAS-like 317 363 - -
Trre9g00339 824 MobiDBLite consensus disorder prediction 748 824 - -
Trre9g00339 824 SUPERFAMILY RING/U-box 315 395 - -
Trre9g00339 824 MobiDBLite consensus disorder prediction 693 824 - -
Trre9g00339 824 MobiDBLite consensus disorder prediction 693 729 - -
Trre9g00339 824 MobiDBLite consensus disorder prediction 416 440 - -
Trre9g00339 824 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 57 431 - -
Trre9g00339 824 Pfam MIZ/SP-RING zinc finger 315 363 IPR004181 GO:0008270
Trre9g00339 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 400 IPR013083 -
Trre9g00339 824 ProSiteProfiles Zinc finger SP-RING-type profile. 304 385 IPR004181 GO:0008270
Trre9g00339 824 MobiDBLite consensus disorder prediction 423 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00339 Trre-Chr9 2431659 2440416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00339 K04706 - gmx:100780539 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00339 9 2431659 2440416 Trre9g00339 9 2431659 2440416 ECH