Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00316 ATGGAAGAAGAATTGGTTGATGAGGGAATTCAATTAGAGTCTGTTGAGGATTCACAGCGCCAGAGTAAAGACGATGATGTGTATTCACCGAATACCGAAAGCCGAAAAATTGTGAAATCTCAACAAGTATTTTTACCTATTAATCATGAGGAGTATGATGATATTCTACATGGTAAAAATGTAGTTGAGGAGGCTGTTAGTGAAGCGGCTACATCACAACATCCTTATGCAACGGTTGAAGAACTGACGGTGAAAAGTTACAATGGTTCGAGTTTTGATATTGGCACATCGAATAGCCAAGTGCAAATGTATAGTCAACAGAAACATTGGCAGAATCTTTATCAGATAGGAAATAATTCTGGAAATGGAAATTCAGTTAGTGATATTGGGTTGATAAATAGTGGCCAGGCTACATCTAGTGTTTGGGAGGATGTTGGAACTGCATCGTTTCCTGAGTTGTTAGCTAGAAAATCACACAGTGATGGTCAGAGCAATGTCATTGAACACTTGGCAGCTGCTGAAAGTAAAGAGGGTGCAGGTGATGTTCATCGAGGAATACGGACAAAAATGATATCCAAATCTGGGTTTGCTGAGTATTTCATTAAAAATACATTGAAGAGTAAGGGTGTTGTACATAAAGGTCCAGCTTTGGATCACTTCACTGTTCAGTCTAGAGAGCAAAATCAGGCAAAAGCTGGCAGTGATGCAGATCAGAATTGGAATAAGACTGGCAGTGTTGCAGATCGGAATAAGATGAAGGCCAGCATTGGTACAGATCAGAAACAGATGAAGGCTGGTTTTGGTTCTCAGTCAAACTCTAATATATCAGTGAAACCTGGTTCCAAATCTGCAAAGTTTCCCTTTAATAGCGATGCTGCTGTGCCTAGATCAAGCATGACTGAATGTGACGGCATAACATTGAGAGATTGGTTAAAATCTGGCAAGCGCAAAGCAAGCAAAGTGGAAAGTTTAAATATATTTACGATGATTGTGGATTTGGTGGATGACTCTCACTCTCGGGGAATTGCATTGCATAGCCTTTGTCCATCTTACATTAAATTGTTACCATCAAATCAGGTCATGTACACCGGGTTACCTACTCAAAAACAGATGGCTGGTAGTGTTGTAAATCCTGAAGTTTGTAACTTAGATAATTCTTTTATTAGAAAAAGGTTGTCTGAGCAAGTAACATCGCCCTCTATTGACATAGGGTCCAAGAAACAAAAATTTGATGAGAATGTGAGGACTGGGAGTGACTCGTGTCTTGAGACTGCTAGTAATCATGAAGTTCAGATTCCTACAATTGGATCACAAGATTATAGAAATGAATATGAGGAAGATAACCAATTTTCTATGTATAATTTTGGGAGAATGGCTAGCATCCCTCGTGTATCTAATGCAGGTCAATTCTCATCCATTTCTTTATGTCAAAGATTGGAAAATAAGTGGTATGCAAGTCCTGAGGGAGGTTGCACAACATCATCAAATATCTACTGTCTCGGTGTATTCCTTTTTGAGTTACTAGGTCATTTTGACTCTGAAAGAGCGCATATTGCAGCAATGTCTGATCTTCATCATAGGATTCTTCCTCCAGCTTTCCTTTCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTTCATCCTGAACCATCGTCACGTCCAACAACAGGGGAAATCCTACAATCTGAAGTGATTAATGGATTACAGGAGTTGTGTAGTGAGGAATTGTCATCATGTATAGACCAGGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTGTTCTCGTTGAAAGAGCAGAAGCAGAGTGATGCCTCCAAATTGGTTGAACAATTAGAGTGCTTGGAATCAGATATAGAAGAGGCAGAGAGGAGGCATGGCTTAAGAAAACCCTTGGTTTCCTCTGGCTTTCAGAACAATTACTCTTCTCAGAAAGAGATTATGCCTCTTACAAAGGAACTTTTGAGTGTAGAAATGCTGCCCACAGTATCCCCAATCTCTAATACAAATGAACTGAGATTGATGAGAAATATAGGCCATCTTGAAAGTGCTTACTTTTCCATGAGATCCAAAGTTCACCTTTCCGAAACAGATGCTACAGATCACCCAGATAAAGGTATACTAAGAACTCGTGAGAACTGGTCTGTGACCCAAAAAGGCGAGGAACAACATAAAAGTAAAGATGCTTTAGGAACCTTCTTTGATGGTTTGTGCAAGTATGCACGTTACAGCAAACTTGAAGTGCGGGGTATACTAAGAAATGCAGATTTTAACAATCCTGCAAATGTGATATGCTCGCTGAGCTTTGATCGGGATAAAGATTACTTTGCTTCTGCAGGGATATCTAAGAAAATAAAAATCTTTGACTTCAATACACTTTGCAATGACTCCGTTGATATTCATTATCCTGCTGTTGAGATGTCAAACAGATCAAAGCTCAGTTGTGTTTGCTGGAATAACTATGTTAAGAACTATCTTGCCTCTACAGACTACGACGGTATAGTGAAGTTATGGGATGCTAGCACAGGTCAAGAATTTTCTCAATATAGTGAACATGAAAAGAGGGCTTGGTCTGTTGACTTCTCTCCGGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAAAAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCAATTTTCGCCTCATTCCTCTCATTTGCTGGCCTTTGGATCTGCGAATTACTCAACTTATTGTTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTGTATTGGTTGGCCATCGTAAAGCTGTAAGCTATGTCAAATTCTTAGACTCTGAAACACTTGTTTCTGCATCTACTGACAATTCATTAAAGATCTGGGATCTCAATAAAACCACTTCGGTTGGTGCATCTACCAGTGCTCGCAGCCTAACCCTGTCTGGACATACTAATGAAAAGAATTTTGTGGGTTTATCTGTTGATGATGGATATATTGCGTGTGGTTCAGAATCAAATGAGGTTTACACCTACTATAAATCCCTTCCCATGCCAATTACGTCACACAAGTTTGGATCTATTGATCCCATCTCTGGTAAAGAGACTGAAGATGACCATGGTCAATTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACATGCTTCTTGCGGCCAATTCAAGTGGATGTATAAAAGTGTTACAGATGGTTTAA 3231 0.3977 MEEELVDEGIQLESVEDSQRQSKDDDVYSPNTESRKIVKSQQVFLPINHEEYDDILHGKNVVEEAVSEAATSQHPYATVEELTVKSYNGSSFDIGTSNSQVQMYSQQKHWQNLYQIGNNSGNGNSVSDIGLINSGQATSSVWEDVGTASFPELLARKSHSDGQSNVIEHLAAAESKEGAGDVHRGIRTKMISKSGFAEYFIKNTLKSKGVVHKGPALDHFTVQSREQNQAKAGSDADQNWNKTGSVADRNKMKASIGTDQKQMKAGFGSQSNSNISVKPGSKSAKFPFNSDAAVPRSSMTECDGITLRDWLKSGKRKASKVESLNIFTMIVDLVDDSHSRGIALHSLCPSYIKLLPSNQVMYTGLPTQKQMAGSVVNPEVCNLDNSFIRKRLSEQVTSPSIDIGSKKQKFDENVRTGSDSCLETASNHEVQIPTIGSQDYRNEYEEDNQFSMYNFGRMASIPRVSNAGQFSSISLCQRLENKWYASPEGGCTTSSNIYCLGVFLFELLGHFDSERAHIAAMSDLHHRILPPAFLSENPKEAGFCLWLLHPEPSSRPTTGEILQSEVINGLQELCSEELSSCIDQEDAESELLLHFLFSLKEQKQSDASKLVEQLECLESDIEEAERRHGLRKPLVSSGFQNNYSSQKEIMPLTKELLSVEMLPTVSPISNTNELRLMRNIGHLESAYFSMRSKVHLSETDATDHPDKGILRTRENWSVTQKGEEQHKSKDALGTFFDGLCKYARYSKLEVRGILRNADFNNPANVICSLSFDRDKDYFASAGISKKIKIFDFNTLCNDSVDIHYPAVEMSNRSKLSCVCWNNYVKNYLASTDYDGIVKLWDASTGQEFSQYSEHEKRAWSVDFSPVCPTKFASGSDDCTVKLWSISEKNCLGTIRNVANVCCVQFSPHSSHLLAFGSANYSTYCYDLRNLRSPWCVLVGHRKAVSYVKFLDSETLVSASTDNSLKIWDLNKTTSVGASTSARSLTLSGHTNEKNFVGLSVDDGYIACGSESNEVYTYYKSLPMPITSHKFGSIDPISGKETEDDHGQFVSSVCWRGKSDMLLAANSSGCIKVLQMV 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00316 1076 MobiDBLite consensus disorder prediction 225 248 - -
Trre9g00316 1076 Pfam WD domain, G-beta repeat 936 968 IPR001680 GO:0005515
Trre9g00316 1076 Pfam WD domain, G-beta repeat 846 884 IPR001680 GO:0005515
Trre9g00316 1076 SUPERFAMILY Protein kinase-like (PK-like) 299 574 IPR011009 -
Trre9g00316 1076 ProSiteProfiles Trp-Asp (WD) repeats profile. 808 850 IPR001680 GO:0005515
Trre9g00316 1076 MobiDBLite consensus disorder prediction 13 32 - -
Trre9g00316 1076 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 734 1076 - -
Trre9g00316 1076 SUPERFAMILY WD40 repeat-like 759 1074 IPR036322 GO:0005515
Trre9g00316 1076 PRINTS G protein beta WD-40 repeat signature 871 885 IPR020472 -
Trre9g00316 1076 PRINTS G protein beta WD-40 repeat signature 828 842 IPR020472 -
Trre9g00316 1076 PRINTS G protein beta WD-40 repeat signature 955 969 IPR020472 -
Trre9g00316 1076 PANTHER PROTEIN SPA1-RELATED 2 13 1076 IPR044630 GO:0009640
Trre9g00316 1076 MobiDBLite consensus disorder prediction 262 281 - -
Trre9g00316 1076 Coils Coil 600 627 - -
Trre9g00316 1076 Gene3D - 735 1076 IPR015943 GO:0005515
Trre9g00316 1076 ProSitePatterns Trp-Asp (WD) repeats signature. 955 969 IPR019775 -
Trre9g00316 1076 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 937 970 - -
Trre9g00316 1076 MobiDBLite consensus disorder prediction 1 33 - -
Trre9g00316 1076 Gene3D Transferase(Phosphotransferase) domain 1 302 574 - -
Trre9g00316 1076 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 886 - -
Trre9g00316 1076 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 893 IPR001680 GO:0005515
Trre9g00316 1076 SMART WD40_4 887 926 IPR001680 GO:0005515
Trre9g00316 1076 SMART WD40_4 930 968 IPR001680 GO:0005515
Trre9g00316 1076 SMART WD40_4 979 1018 IPR001680 GO:0005515
Trre9g00316 1076 SMART WD40_4 752 791 IPR001680 GO:0005515
Trre9g00316 1076 SMART WD40_4 844 884 IPR001680 GO:0005515
Trre9g00316 1076 SMART WD40_4 1035 1074 IPR001680 GO:0005515
Trre9g00316 1076 SMART WD40_4 801 841 IPR001680 GO:0005515
Trre9g00316 1076 ProSitePatterns Trp-Asp (WD) repeats signature. 828 842 IPR019775 -
Trre9g00316 1076 MobiDBLite consensus disorder prediction 262 280 - -
Trre9g00316 1076 MobiDBLite consensus disorder prediction 225 250 - -
Trre9g00316 1076 ProSiteProfiles Trp-Asp (WD) repeats profile. 937 977 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00316 Trre-Chr9 2265261 2273026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00316 828 986 Miscellaneous Gene Families AT5G08390 27.273 2.03e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00316 K16240 - gmx:100778303 1630.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00316 9 2265261 2273026 Trre9g00316 9 2265261 2273026 ECH