Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00310 ATGGCGTCTCCTCAAGATTCCGTTGCAAACACAAATGATCACACGTCTGCAGTTTCCGGTGGGATCACCGGAGAAGGTGGGAAACCTCCTAGCCATGCGTTGATCAGTATCTGCAAATCTCTTGTTGCCGGTGGAGTCGCCGGAGGAGTTTCACGAACAGCTGTAGCTCCTCTAGAGAGATTGAAGATTCTGCTGCAGGTTCAAAATCGTCACAATGTAAAATACAACGGAACGGTTCAGGGCTTAAAATATATATGGAAAACTGAGGGTTTTAGGGGAATGTTTAAAGGAAACGGAACCAATTGCGCTCGTATTATCCCAAATTCAGCAGTGAAGTTCTTTAGCTATGAGCAAGCATCTAAGGGTATTCTAAGTCTCTATCGGTTGCAAACTGGAAATGAAGAAGCTCAACTCACTCCTCTTCTGCGTCTTGGAGCTGGGGCATGTGCGGGAATCATTGCAATGTCTGCAACTTACCCTATGGACCTAGTGCGAGGACGCCTAACTGTACAGACAGAAGCATCTCCTCAGCAATACAGAGGAATTTTTAATGCTCTTTCAACAGTCTTCCGAGAAGAAGGCGCAAGAGCATTGTATAAAGGATGGTTACCTTCAGTCATAGGAGTTATACCGTATGTGGGCCTAAATTTTTCTGTATATGAATCTCTGAAAGACTGGTTGATTCAAACAAAACCACTTGGAATAGCTCAAGACTCGGAGCTAAGTGTGACGACAAGGCTTGCATGTGGGGCTGCTGCTGGAACTATTGGACAGACAGTGGCATACCCCCTTGATGTCATTCGCAGAAGAATGCAGATGGGTGGATGGAAAGGCGCTTCTTCGATTGTAGCTGCTGATGGGAAGGGTCTTGAGTATACTGGCATGGTTGATGCATTCAGGAAAACAGTAAAGTATGAGGGATTTGGAGCATTATACAAGGGCTTAGTCCCTAATTCAGTCAAGGTGGTACCTTCCATTGCCATTGCCTTCGTGTCATACGAGATGGTTAAAGACGTCCTTGGAGTTGAAATGAGAATATCTGACTGA 1047 0.4537 MASPQDSVANTNDHTSAVSGGITGEGGKPPSHALISICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRHNVKYNGTVQGLKYIWKTEGFRGMFKGNGTNCARIIPNSAVKFFSYEQASKGILSLYRLQTGNEEAQLTPLLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEASPQQYRGIFNALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIQTKPLGIAQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMGGWKGASSIVAADGKGLEYTGMVDAFRKTVKYEGFGALYKGLVPNSVKVVPSIAIAFVSYEMVKDVLGVEMRISD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00310 348 PANTHER SOLUTE CARRIER FAMILY 25 34 342 - -
Trre9g00310 348 FunFam Mitochondrial substrate carrier 33 342 - -
Trre9g00310 348 Gene3D Mitochondrial carrier domain 32 342 IPR023395 -
Trre9g00310 348 Pfam Mitochondrial carrier protein 36 122 IPR018108 -
Trre9g00310 348 Pfam Mitochondrial carrier protein 138 229 IPR018108 -
Trre9g00310 348 Pfam Mitochondrial carrier protein 240 340 IPR018108 -
Trre9g00310 348 SUPERFAMILY Mitochondrial carrier 35 335 IPR023395 -
Trre9g00310 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 138 226 IPR018108 -
Trre9g00310 348 PRINTS Mitochondrial carrier protein signature 97 117 IPR002067 GO:0055085
Trre9g00310 348 PRINTS Mitochondrial carrier protein signature 40 53 IPR002067 GO:0055085
Trre9g00310 348 PRINTS Mitochondrial carrier protein signature 153 171 IPR002067 GO:0055085
Trre9g00310 348 PRINTS Mitochondrial carrier protein signature 53 67 IPR002067 GO:0055085
Trre9g00310 348 PRINTS Mitochondrial carrier protein signature 250 272 IPR002067 GO:0055085
Trre9g00310 348 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Trre9g00310 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 339 IPR018108 -
Trre9g00310 348 MobiDBLite consensus disorder prediction 1 25 - -
Trre9g00310 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 35 122 IPR018108 -
Trre9g00310 348 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00310 Trre-Chr9 2235069 2237609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00310 7 343 EF-hand Containing Proteins AT5G51050 37.647 1.19e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00310 K14684 - gmx:100784834 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00310 9 2235069 2237609 Trre9g00310 9 2235069 2237609 ECH