Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00044 ATGTATCCTTTGCTTGTGGCCTGTAAATCAATAAGCAACCTACGCAAAGCTGCAGCTGAGGAAGTTGTGGACAAAGTTCGGCAGCATAGTGGTGCACTTGTGGATCAGGCTCAACTTGTATCAAAAGAACTTATCAGAGTCGCTATTCTTTGGCACGAACTATGGCATGAAGCACTGGAAGAAGCCAGCCGTCTTTATTTTGGTGAACATAATATTGAAGGGATGTTAAAGGTGTTGGAGCCATTGCATGAGATGCTTGAAGAAGGTGCAATGAAAAACAATGCAACCATAAAGGAGAGAGTATTTATTGAGGCTTATCGACAGGAGTTATTAGAAGCTTATGATTGCTGTATGAATTATAAGAGAACTGGGAAAGATGCTGAGCTTACTCAGGCATGGGATATATATTATCATATATTCAGAAAGATAGATAAGCAACTTCAAAGTCTCAATACTTTAGACTTGGAGACGGTTTCTCCAGAGTTGCTTGAATGCCGAAATTTAGAGCTTGCTGTTCCTGGGACATACCGTGCTGATGCACCAGTTGTTACTATTGCATCATTTGCACGTCAGCTTGTTGTCATACCATCTAAGCAACGGCCCAGGAAATTAACTATTCATGGGAGTGATGGCGATGATTATGCCTTCTTATTGAAGGGGCATGAGGATTTACGCCAGGATGAACGAGTCATGCAGCTTTTCGGTTTGGTGAATACGCTGCTTGAGAATTCTCCTAAAACAGCTGAGAAAGATCTGTCTATTGAACGATATGCTGTAATCCCTTTATCTCCAAACAGTGGTCTAATTGAATGGGTCCCGAATTGTGACACTTTGCACAGTCTTATCCGGGAGCACAGAGATGCTAGAAAGGTCATATTGAATCATGAACACAAATGCATGCTCAGTTTTGCACCTGATTATGATCATTTGCCTCTTATAGCTAAAGTGGAGGTGTTTGAGCTTGGTTTGCAAAGTGCTGAAGGAAATGACCTAGCAAAGGTGCTTTGGTTGAAAAGTCGAACTTCTGAGGTATGGCTCGAGAGGAGGACAAATTATACTAGGAGTTTGGCAGTTATGAGCATGGTTGGCTACCTTCTCGGGTTGGGTGATCGCCATCCTAGCAATCTTATGTTGCACCGGTTTAGTGGGAAGATTTTACACATAGATTTTGGAGACTGTTTTGAAGCTTCAATGAATCGTGAGAAGTTCCCGGAGAAGGTTCCATTTCGCTTGACAAGAATGCTTGTGAAAGCTATGGAAGTTAGTGGTATCGAAGGAAACTTCCGTTCAACTTGTGAAAATGTTATGCAAGTTTTGCGAACAAATAAAGATAGTGTTATGGCCATGATGGAGGCCTTTGTGCACGATCCTCTCATAAATTGGCGTCTTTTCAACTTCAACGAAGTTCCGCAAATGTCAATGCTTGCTAGCAATCACGTACCTCCTGTTGTCACTAGTGAAGAATCTGGCCCAAATAGAGAGCTTCCTCATCCTCAGCGTGGTGTCCGTGAAAGGGAACTTCTTCAGGCTGTTAACCAACTTGGCGATGCTAATGGGGTTCTGAATGAGCGTGCTGTGGTTGTCATGGCTCGTATGAGCAATAAGCTTACAGGACGGGATTTTTCAACATGCTCTTCAGTATTAAACAACTCCCTTCAGAATGCTGTGGACCATAACGGTTTAATTTCTGGAGACGCTCGTGAAACTGATCATGCTTTATCTGTGAAATTGCAAGTACAAAAATTAATATCACATGCCACCTCACATGAAAATTTGTGTCAAAATTATGTCGGGTGGTGCCCTTTCTGGTAA 1812 0.4233 MYPLLVACKSISNLRKAAAEEVVDKVRQHSGALVDQAQLVSKELIRVAILWHELWHEALEEASRLYFGEHNIEGMLKVLEPLHEMLEEGAMKNNATIKERVFIEAYRQELLEAYDCCMNYKRTGKDAELTQAWDIYYHIFRKIDKQLQSLNTLDLETVSPELLECRNLELAVPGTYRADAPVVTIASFARQLVVIPSKQRPRKLTIHGSDGDDYAFLLKGHEDLRQDERVMQLFGLVNTLLENSPKTAEKDLSIERYAVIPLSPNSGLIEWVPNCDTLHSLIREHRDARKVILNHEHKCMLSFAPDYDHLPLIAKVEVFELGLQSAEGNDLAKVLWLKSRTSEVWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRFSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRTNKDSVMAMMEAFVHDPLINWRLFNFNEVPQMSMLASNHVPPVVTSEESGPNRELPHPQRGVRERELLQAVNQLGDANGVLNERAVVVMARMSNKLTGRDFSTCSSVLNNSLQNAVDHNGLISGDARETDHALSVKLQVQKLISHATSHENLCQNYVGWCPFW 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00044 603 Pfam FATC domain 573 603 IPR003152 GO:0005515
Trre9g00044 603 SMART pi3k_hr1_6 215 535 IPR000403 -
Trre9g00044 603 Gene3D - 46 141 IPR036738 GO:0044877
Trre9g00044 603 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 188 505 IPR000403 -
Trre9g00044 603 SUPERFAMILY Protein kinase-like (PK-like) 128 467 IPR011009 -
Trre9g00044 603 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 355 375 IPR018936 GO:0016301
Trre9g00044 603 PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 1 603 - -
Trre9g00044 603 SUPERFAMILY FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 47 144 IPR036738 GO:0044877
Trre9g00044 603 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 218 232 IPR018936 GO:0016301
Trre9g00044 603 Gene3D - 142 272 - -
Trre9g00044 603 ProSiteProfiles FATC domain profile. 571 603 IPR003152 GO:0005515
Trre9g00044 603 CDD PIKKc_TOR 185 463 IPR026683 GO:0004674
Trre9g00044 603 Gene3D - 315 479 IPR036940 -
Trre9g00044 603 FunFam Serine/threonine-protein kinase TOR 313 489 - -
Trre9g00044 603 SMART Rapamycin_bind_3 43 146 - -
Trre9g00044 603 FunFam Serine/threonine-protein kinase TOR 143 272 - -
Trre9g00044 603 FunFam Serine/threonine-protein kinase TOR 46 143 - -
Trre9g00044 603 SMART FATC_2 571 603 IPR003152 GO:0005515
Trre9g00044 603 Pfam Phosphatidylinositol 3- and 4-kinase 214 462 IPR000403 -
Trre9g00044 603 Pfam FKBP12-rapamycin binding domain 43 145 IPR009076 GO:0044877
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00044 Trre-Chr9 500168 506897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00044 201 450 Acyl Lipid Metabolism Gene Families AT1G60490 25.490 3.98e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00044 K07203 - gmx:100816446 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00044 9 500168 506897 Trre9g00044 9 500168 506897 ECH