Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00034 ATGGAGGGAAGCGAAGAAGACAATAAATATGATGATACTGCATCTGCTTCTGGTCCTCATCACCCATGGCAGTCTTACAACACTGTCTACACAACCGCCAAAGCAGGAATGGAGGGGGTTGACAAGGAGAAAGTGCAAAGGATAGTTTACGAAATGAGTAAAGGATCCAAATATTTTCAGAATGAAGAACGGAAGGAGGCTTTTATCAAACACAAAATTGAAAACATGAGAGTTCACTTTGCAAAGCTTACACAGCCTGATTTAGCCCATTACCAGAAGATTGCTGATAGAAGGATTCTTGAGCTGGAAGCGTCGCGCGACCTTTCTAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAAGTAACCCTACTTTAAAGGGCAAGCCAATGGCTGTCGGTAGCATGTCTATGATATCCACTGCCAATTATGAGGCCAGGAAATTTGGGGTTCGTTCTGCTATGCCTGGGTTCATTGCAAAAAAGCTATGTCCAGAGTTAATCTTTGTCCCAGTAGATTTCAAGAAGTATACTTATTCCAGTGATTTGACCAGAAAGGTTTTTCAGAGGTATGATCCCAATTTCATTGCTGGTAGCCTGGATGAAGCATACCTTGATATAACTGAAGTTTGCAGAGAAAGGAATGTCAAAAGTGAAGAAATTGCTCAAGAAATCAGAGCCAGTGTTTATGAAGAGACCGGTCTCACATGTAGTGCTGGAGTGGCACCGAATCGCTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTATGTTTTACCAAATGACCGCTTGGCAGTTATGACTTTCATATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACTGAACATATTTTGAAGGAAGTTTTTGGAATAAACACATGTGAGCAGATGCTGGATAAGAGTAGCTATCTTTGTGCTCTTTTTTCTCAGTCAACAGCAGATTTTTTTTACTCTGTGGGTTTAGGTTTGGGAAAGACAGATTCCCCCCAAGTAAGATTCCGGAAAAGTATCAGCAATGAGAGGACGTTTTCTGTCACTGAGGACGAAGTGCTGTTGCATAAAAAATTAGCGGAGCTTGCTGAAATGCTTTCCACAGACATGCAAAAAGAGGGTCTGCATGGACGAACATTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGAAATAGAGTTGTGACTTTACAAAACTACATCAACTCAAGTGAGGATATTTTGAAGCATGCATCAAAATTGCTGAAAGCTGAACTTCCCGTTTCAGTAAGATTAATAGGCCTTAGAGTGTCTCAGTTCAATGGAGAAAAGTTTGGTGCTACCCCTGATCCTACACAGAAGACTATTACCAGTTTCATTACTTCAGGAGAACCCAATAGGAAAAATAGTTCTTTTTCAGATGTTGCAGATCACGACTTTGTCAGTGATACAGAAACTGATGTTTCCATTGACGGTAGGCACACAGATCAGCTTGATGGCAGACATCCTTTTGATGGTAATCATTCGTTAGATGTAACTTACCAAAGCTGCACTCTCTGGAAGAATGATGGTGCAGAGGAGGTGCAAACTTCTGACAATGATGACCCAAGTTCTAATCACAGTGGATGTACAGAGGTTCTGGGATCAACTTCTATCCAGGGGCAGTTTGAGGGCAAAAATGTGAATAATGAGTCTATTCTCCAGGAGGATGATAAACTTAATTCCTGTCAGGAAACGATAATGCTGTGGTTGGATGACTATAAATGTTCACTCTGTGGAACAGAACTTCCTCCAAGTTTTGTTGAGGAAAGATTAGAGCATGCTGATTTCCATTTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGTATTCGCCAAGCATCCACTCCGATTCGAAGTCAGGATCAGAAACACCGAATCAATAGACAAAGCAAATCCAAGAAGCAAAAGTTGTCTCATAAGGAGGGCAGGTATACGCCCATTGATCATTTTTTTGTTAGAGAGTAA 2019 0.4106 MEGSEEDNKYDDTASASGPHHPWQSYNTVYTTAKAGMEGVDKEKVQRIVYEMSKGSKYFQNEERKEAFIKHKIENMRVHFAKLTQPDLAHYQKIADRRILELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKPMAVGSMSMISTANYEARKFGVRSAMPGFIAKKLCPELIFVPVDFKKYTYSSDLTRKVFQRYDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQEIRASVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKVTEHILKEVFGINTCEQMLDKSSYLCALFSQSTADFFYSVGLGLGKTDSPQVRFRKSISNERTFSVTEDEVLLHKKLAELAEMLSTDMQKEGLHGRTLTLKLKTASFEVRNRVVTLQNYINSSEDILKHASKLLKAELPVSVRLIGLRVSQFNGEKFGATPDPTQKTITSFITSGEPNRKNSSFSDVADHDFVSDTETDVSIDGRHTDQLDGRHPFDGNHSLDVTYQSCTLWKNDGAEEVQTSDNDDPSSNHSGCTEVLGSTSIQGQFEGKNVNNESILQEDDKLNSCQETIMLWLDDYKCSLCGTELPPSFVEERLEHADFHFAEKLQKEESSIRQASTPIRSQDQKHRINRQSKSKKQKLSHKEGRYTPIDHFFVRE 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00034 672 CDD PolY_Pol_IV_kappa 113 445 IPR022880 GO:0003887
Trre9g00034 672 ProSiteProfiles Zinc finger UBZ3-type profile. 587 624 IPR041298 -
Trre9g00034 672 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 23 670 - -
Trre9g00034 672 FunFam DNA polymerase kappa 226 341 - -
Trre9g00034 672 Hamap DNA polymerase IV [dinB]. 109 461 IPR022880 GO:0003887
Trre9g00034 672 SUPERFAMILY DNA/RNA polymerases 87 340 IPR043502 -
Trre9g00034 672 Gene3D - 268 341 - -
Trre9g00034 672 MobiDBLite consensus disorder prediction 530 551 - -
Trre9g00034 672 Pfam impB/mucB/samB family C-terminal domain 348 448 IPR017961 GO:0003684|GO:0006281
Trre9g00034 672 MobiDBLite consensus disorder prediction 623 665 - -
Trre9g00034 672 FunFam Polymerase (DNA directed) kappa 122 174 - -
Trre9g00034 672 Gene3D - 346 450 IPR036775 GO:0003684|GO:0006281
Trre9g00034 672 Pfam impB/mucB/samB family 115 259 IPR001126 GO:0006281
Trre9g00034 672 Gene3D - 30 116 - -
Trre9g00034 672 FunFam DNA polymerase kappa subunit 173 267 - -
Trre9g00034 672 Gene3D - 129 177 - -
Trre9g00034 672 Pfam Ubiquitin-Binding Zinc Finger 590 624 IPR041298 -
Trre9g00034 672 Gene3D - 117 267 IPR043128 -
Trre9g00034 672 ProSiteProfiles UmuC domain profile. 112 292 IPR001126 GO:0006281
Trre9g00034 672 FunFam DNA polymerase kappa subunit 29 119 - -
Trre9g00034 672 PIRSF DNA_pol_eta 104 226 - -
Trre9g00034 672 PIRSF DNA_pol_eta 455 672 - -
Trre9g00034 672 PIRSF DNA_pol_eta 222 484 - -
Trre9g00034 672 FunFam DNA polymerase IV 345 451 - -
Trre9g00034 672 MobiDBLite consensus disorder prediction 1 25 - -
Trre9g00034 672 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 346 443 IPR036775 GO:0003684|GO:0006281
Trre9g00034 672 Pfam IMS family HHH motif 275 305 IPR024728 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00034 Trre-Chr9 427358 431951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00034 K03511 - gmx:100816973 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00034 9 427358 431951 Trre9g00034 9 427358 431951 ECH