Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00032 ATGAAAATCCGATCAGTATTCGACGGCGTTGAGTTGAGAAGTGAATTCGAAAATATTGGTATCGATTCAAAGTTCGTACGAATCGTATGGAAACATCTGTTTCTAACTCTGAGAAGTGGCGGCGAAGAATCCAATTATTGGGAATGGGAGAAGCACGTTCCTTCTTTGCCATCTTCAGCCTATACCTTCCTCCGTTCCAACTTCAAAACCCCTCTCTCTTCTACTCTCCACTCCGTTTTCCACTCTTCCGATAACCTCACTTCCAAGCTCCTCATCAAGCTCCAAAATGGAGCTTTTGTGGAAGCTGTGATTATGAGATATGATACTCGTTTGGGTAAATATGGCGGTAAACCTCGTCCCGGTGGTCTCAGAGCTACTTTGTGTATTTCTTCTCAGGTTGGATGCAAAATGGGTTGCAAATTCTGTGCAACTGGAAGTATGGGATTCAAAAGTAATTTATCCTCTGGAGAAATTGTTGAGCAATTAGTTCATGCCTCTACTTTTGCACATATCCGTAATGTTGTTTTCATGGGAATGGGAGAGCCTCTCAACAACTACTCTGCTGTCGTAGAATCTATTCGTATCATGACTGGCTCGCCATTTCAATTGTCATTGAAACGGATTACTGTCTCAACGGTTGGCATCATTCATGCTATCAACAAGCTACATAATGATGTGCCTGGTTTGAATTTGGCCGTCTCACTACATGCACCAGCCCAAGACATCCGTTGCCAGATAATGCCCGCTGCCCGTGCTTTCCCTTTGGAAAAACTTATGGATTCACTGCAAGAATATCAAAGGAAAAGTCTGCAGAAAATATTAATTGAATACATAATGCTTGATGGTGTGAATGATGAAGAGCAGCATGCCCACCTATTAGGAAAACTGCTGGAGACATTTGAAGTGGTAGTAAACTTAATACCTTTCAACTCTATTGGTACATTGAGTCAATTCAAATCTACTAGTGAGCAGAAAGTGTCTAAGTTTCAGAAAATTTTACGGGGTACCTATAATATTCGAACAACAGTCCGGAAGCAGATGGGTGAGGATATAAGTGGTGCGTGTGGACAATTGGTGGTTAACTTACCTGACAAGTCTCTTGGAAATGCTAACCCCCTAACGGATATAGAAGATCTTGTTATTTGA 1146 0.4171 MKIRSVFDGVELRSEFENIGIDSKFVRIVWKHLFLTLRSGGEESNYWEWEKHVPSLPSSAYTFLRSNFKTPLSSTLHSVFHSSDNLTSKLLIKLQNGAFVEAVIMRYDTRLGKYGGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASTFAHIRNVVFMGMGEPLNNYSAVVESIRIMTGSPFQLSLKRITVSTVGIIHAINKLHNDVPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMDSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETFEVVVNLIPFNSIGTLSQFKSTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQLVVNLPDKSLGNANPLTDIEDLVI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00032 381 ProSiteProfiles Radical SAM core domain profile. 121 350 IPR007197 GO:0003824|GO:0051536
Trre9g00032 381 SFLD adenosine C2 methyltransferase (RlmN-like) 61 362 IPR004383 GO:0006364|GO:0008173
Trre9g00032 381 Pfam Radical SAM superfamily 130 287 IPR007197 GO:0003824|GO:0051536
Trre9g00032 381 SUPERFAMILY Radical SAM enzymes 126 292 - -
Trre9g00032 381 Pfam 4Fe-4S single cluster domain 134 219 - -
Trre9g00032 381 SFLD methyltransferase (Class A) 61 362 - -
Trre9g00032 381 PANTHER 23S RRNA METHYLTRANSFERASE 8 364 IPR040072 -
Trre9g00032 381 FunFam 23S rRNA methyltransferase 74 365 - -
Trre9g00032 381 PIRSF Cfr 11 372 IPR004383 GO:0006364|GO:0008173
Trre9g00032 381 Gene3D Aldolase class I 75 365 IPR013785 -
Trre9g00032 381 CDD Radical_SAM 134 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00032 Trre-Chr9 409440 412197 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00032 - - tpra:123909522 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00032 9 409440 412197 Trre9g00032 9 409440 412197 ECH