Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00027 ATGGCTTCATCTTCTTCTTCTCAATCTCAACAGGAATCTGGTTTATTATCGGAAGAAGATTACGACTTAATCCACGGCTCTGAATCTGGTTGGGTCGATGCTCGAACTTCATGCAATCATCTCTCTTCCTTATCCGCTGATCTTACCCACATTCCAATTCCCAATACTCCCTGCAACAAGTGCCAACACCCGAGTGAAAACTGGCTTTGTTTGTCATGTAAGGAAGTTCTCTGTGGCCGTTTTGTCAACAGGCATATGCTCCACCATTTTCGTCAAACTAATCATAGTGTCGCCCTCAGTTTTAGTGATCTCTCAGTATGGTGCTTCTCCTGTGATGCTTATTTGGATGCTCAAGTTATTCCTCAATTACGTCCTGTTCATCAATTGGCCTATATATTGAAATTCAATGAGCCTCCACCACTTGGATCAACCTGA 435 0.4299 MASSSSSQSQQESGLLSEEDYDLIHGSESGWVDARTSCNHLSSLSADLTHIPIPNTPCNKCQHPSENWLCLSCKEVLCGRFVNRHMLHHFRQTNHSVALSFSDLSVWCFSCDAYLDAQVIPQLRPVHQLAYILKFNEPPPLGST 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00027 144 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 1 142 - -
Trre9g00027 144 SUPERFAMILY RING/U-box 36 127 - -
Trre9g00027 144 Pfam Zn-finger in ubiquitin-hydrolases and other protein 58 116 IPR001607 GO:0008270
Trre9g00027 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 138 IPR013083 -
Trre9g00027 144 ProSiteProfiles Zinc finger UBP-type profile. 36 137 IPR001607 GO:0008270
Trre9g00027 144 SMART Zf_UBP_1 57 106 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00027 Trre-Chr9 380770 381462 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00027 - - aprc:113869857 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00027 9 380770 381462 Trre9g00027 9 380770 381462 ECH