Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00022 ATGGCGGTTTCAATGGCTACGGGACTATTATTCTCTACATCTTTGAGGCAACCTCAACCAAAGTTTGCGTTTCCCACACCCTCTTCTACTTTCCACAACAACCGGGTGCGGCCACTCCGAACAGTTATTTCTGCCACCGTCTCTCAGCCACCCGCCGGGGGCAAAGGTCGAGGTATCATGCAGCCCAAAAAAATCAGCCCTGAGATGCAAGACCTTGTCGGACTTCCAGAGATTTCCCGAACCCAAGCACTCAAGCACATTTGGGCTCACATTAAGGAAAACAATCTCCAGGACCCTGAAAACAAAAGGCGTATACGCTGTGATGAGAAGCTGAAGAAGGTATTTGCAGGGAGAGATGAAGTTGGTATGCTTGAGATTGCTGGCTTGATTAGCCCTCATTTCCTTAAATCCACTTAG 417 0.4868 MAVSMATGLLFSTSLRQPQPKFAFPTPSSTFHNNRVRPLRTVISATVSQPPAGGKGRGIMQPKKISPEMQDLVGLPEISRTQALKHIWAHIKENNLQDPENKRRIRCDEKLKKVFAGRDEVGMLEIAGLISPHFLKST 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00022 138 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 52 135 - -
Trre9g00022 138 Pfam SWIB/MDM2 domain 62 134 IPR003121 -
Trre9g00022 138 SUPERFAMILY SWIB/MDM2 domain 54 136 IPR036885 -
Trre9g00022 138 ProSiteProfiles SWIB/MDM2 domain profile. 58 136 IPR003121 -
Trre9g00022 138 SMART swib_2 59 138 IPR019835 -
Trre9g00022 138 Gene3D SWIB/MDM2 domain 53 138 IPR036885 -
Trre9g00022 138 CDD SWIB-MDM2_like 64 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00022 Trre-Chr9 358714 359939 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre9g00022 SWIB 9.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00022 - - lja:Lj1g3v0050930.1 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00022 9 358714 359939 Trre9g00022 9 358714 359939 ECH