Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00017 ATGAGTTTGAATTCTAAACGATCATCGTCCAATCGATCCAGTGATAACAACACCAACAAGAGGAAGAAGCAGAAAATCAGCGCCAACCAGAAAACCTTAGGCGTCGTATGGGGATCTAATTCCCCAAAATCCCCTTTCTCCGATGTCGGGAGTTATATGACTGAGAAGAATCGGAAACTACACAATCAGTTTAATGCCGAAGCTTCCACATCTTCATTTAGTGGCTCTACTTCTCAGAACCCTATATTCGCCGGAGTTTCAATTTTTGTCGATGGTTTCACCGTTCCTTCCAGCCAGGAACTGCGGGGCTACATGTTAAAGTATGGTGGAAGATTTGAGAATTATTTCTCAAGGCATCGTGTAACACATATCATCTGCACCAATCTTCCTGACAGTAAAATTAAGAACCTCAGAGCTTTCAGTGCAGGCCTTCCTGTGGTAAAACCAACTTGGATTTTAGATTCAGTTGCATCTAATAGACTCTTAACCTGGGTGCCTTATCAACTCGAACAACTTTCTAATAACCAACAACCAAAACTGTCGAAATTCTTCTCATTGAGAAATAGAAAAAATTCTCAAGATACTTTTACTAACGCCCTTTGTCAAGTAGAGCCTGGCATTGATGATTCCTCTGCTAGTGTTGGCAAATCAGAGGATGGACATTCATCCGAAGTTGAGAAAGTGGTTGAACCTAGCAGGCAAATCAGTATGGAAGCTGATGATACTGTCTCAGAGAATACTGATGCAATCATGACCGACGAGCAGCTGACTAGCGTTGGAGTTAAATGTGATGAAGAAGACCCTGCAGGAGGAAGAAATGATGCTTCTAAAGATGAGAGTAACTTCCAAAGTGAACTTGAAACTAATTATCAAAAACCGTCAACATCAATTAGTAGCCCCTGCTCAGATGATCAGAATGTAAAAGAATTTCCAAGTCCTGCCTCCATCGGGCCTTCTAAACAGGGTCATTCAACTCTTTCAGATCCTAATTTTGTGGAAAATTATTTTAAGAGCTCACGGCTACACTTCATTGGAACCTGGAGAAACCGGTATCGTAAGCGTTTTCCCATCTTGTCTACTGGGTTTGACAATGGAATTTCTAATATTAATACTTCTAGCGTTTCTGGGAATTCAACCATTATCCATGTTGACATGGATTGCTTTTTTGTCTCAGTGGTTATCAGGAACCACCCTGAATTGTTGGAAAAGCCTGTAGCTGTCTGCCACTCAAATAATTCTAAGGGAACAGCTGAGGTTTCCTCTGCAAACTACCCAGCTCGTAGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCTCTTTGCCCCCACCTTGTTATCTTTCCATACAACTTTGAAGCTTACGAGGAAGTAGCTGATCAATTTTATAGTATATTGCATCGACATTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTCACCCATTCAAAGGTTGAAGATCCTGAACTTTTAGCGTCATCAATTAGGAAAGAGATCTATGAGACTACTGGATGTACAGCCAGTGCTGGCATAGCTGGAAACATGCTTATAGCTCGTATTGCTACTAGAACTGCTAAACCAAACGGTCAATATCATATAACTCCAGAAAGGGTTCAAGACCATTTAAATCAACTCCCAATTAATGCACTTCCTGGAGTAGGGCATGTTCTACAGGAAAAATTGAAGAAGCATAATGTTCAAACATGTGGACAATTGATGATGATTTCCAAGGTCTCACTGCAGAAGGACTATGGAATGAAAACAGGAGAAATGTTGTGGAACTATAGCAGAGGAATTGATAACCGGTTGGTTGGGGACTTCCAGGAATGCAAGTCTATTGGTGCTGATGTAAATTGGGGTGTGAGGTTCAAAGATATGAAAGATTGTGACAATTTCCTAACAAGCCTTTGCAAGGAGGTTTCGTTACGATTGCAAAGTTGTGGCATGCAAGGGCGCACTTTCTCTCTCAAGATAAAAAAGAGAAGAAAAAATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGAGACTGTGAAAATTTGAGTCACTCAGTAACGATTCCTGTTGTCACTGATAACGTGGAAGTACTCCAAAGGATAGTAAAGCAGCTTTTTGGAAGTTTTTACATAGATGTCAAGGAGATTCGAGGTATTGGCCTGCATGTTTCCAGACTTGAAAATAGCGAAACATCTAAGCAAGAAAAATATAATTTGAAATCATGGGTCACTTCAGGATCTGCAAGTATGGATAAACAGAAACATCCTATGGGTAATGGTCATGACAAGCAGAATATGGACGGCACTTCCGTTCATGAATGTAGAGATCTGAGAGGGTCTTCAGTTCAAATGGACAATAACATACAAGATAACCAAGCTAGTGTTGACCGAATTTCAACACCACCTCTTTTGTGTCACCTTGATGTGGAAGTTATTAGGAATCTTCCCGCAGACGTATTTTCAGAATTAAATGAAATTTATGGAGGGAAGTTAGTTGATTATATTACTAAAGGGAAAGGCATAAGTGAGAGTTCTAGCTCTTTACGGAACTCACTTTTGGAAAAAGAAGCAATAAACAAGGAAGAGGAGCTTTTGGATGTTGACCCGATTCTTCAAAAAAAGAAATTATCTGAAATTGAGGCAATGCAACATGAGGCAGAAGGAGGTGGAGCTGTACCCATACCCGATTCAGGGTCTGGACCCTCTTTCAATGTTAAATCAAGTTTTGAAAAAGATGATTTATTGCCTTCTTCTTTAAGTCAAGTTGACGGTTCTGTGTTACGAGAATTGCCTGAGGATTTGAAAGCAGTCATTGTTCTGCAGCTTCCTGCACACAGGAGACAGGAGATTTGCTCCAATGTTGCTGTGGTCCTTCCTAGTGAAAACCATCAGGTGTCATTAGGTGTCAAGAATTCCGAGAATCTAGGATCAAATCATGTTTTGAATGAATGTCTTTGGGCTGGGAATCCTCCAAAATGGGTGGAGGAGTTTAAAATCAGCAGTTGCTTAATATTAAAGAAACTTGCCGAAAGGTATTATAGATCAGAGTTGACTAGCACATTATCATCCGTTTTGCACCAAATTATATCTGAATTCCACCAGCTAAATGAAGTCCATCAGATTTCTGATGATTCTGTTAACATCATGTGTGAGCTACTGAAGCAGTATATCAAAGTGAAGATAGGAAAGGATATTGAAGAAATTTATATTTGTTTTCGGCTTCTGAAAAGGTTTGCGGCAAAATCACAATTTTTCCTACAAGTGTATAATGGTGTATTTCCATACCTTCAGGAAGCTGTTGACGACAATTATGGAGGAAGTTTGTCTATAACCCGATAG 3354 0.4013 MSLNSKRSSSNRSSDNNTNKRKKQKISANQKTLGVVWGSNSPKSPFSDVGSYMTEKNRKLHNQFNAEASTSSFSGSTSQNPIFAGVSIFVDGFTVPSSQELRGYMLKYGGRFENYFSRHRVTHIICTNLPDSKIKNLRAFSAGLPVVKPTWILDSVASNRLLTWVPYQLEQLSNNQQPKLSKFFSLRNRKNSQDTFTNALCQVEPGIDDSSASVGKSEDGHSSEVEKVVEPSRQISMEADDTVSENTDAIMTDEQLTSVGVKCDEEDPAGGRNDASKDESNFQSELETNYQKPSTSISSPCSDDQNVKEFPSPASIGPSKQGHSTLSDPNFVENYFKSSRLHFIGTWRNRYRKRFPILSTGFDNGISNINTSSVSGNSTIIHVDMDCFFVSVVIRNHPELLEKPVAVCHSNNSKGTAEVSSANYPARSYGIRAGMFVRDAKALCPHLVIFPYNFEAYEEVADQFYSILHRHCNKVQAVSCDEAFLDVTHSKVEDPELLASSIRKEIYETTGCTASAGIAGNMLIARIATRTAKPNGQYHITPERVQDHLNQLPINALPGVGHVLQEKLKKHNVQTCGQLMMISKVSLQKDYGMKTGEMLWNYSRGIDNRLVGDFQECKSIGADVNWGVRFKDMKDCDNFLTSLCKEVSLRLQSCGMQGRTFSLKIKKRRKNADEPAKFMGCGDCENLSHSVTIPVVTDNVEVLQRIVKQLFGSFYIDVKEIRGIGLHVSRLENSETSKQEKYNLKSWVTSGSASMDKQKHPMGNGHDKQNMDGTSVHECRDLRGSSVQMDNNIQDNQASVDRISTPPLLCHLDVEVIRNLPADVFSELNEIYGGKLVDYITKGKGISESSSSLRNSLLEKEAINKEEELLDVDPILQKKKLSEIEAMQHEAEGGGAVPIPDSGSGPSFNVKSSFEKDDLLPSSLSQVDGSVLRELPEDLKAVIVLQLPAHRRQEICSNVAVVLPSENHQVSLGVKNSENLGSNHVLNECLWAGNPPKWVEEFKISSCLILKKLAERYYRSELTSTLSSVLHQIISEFHQLNEVHQISDDSVNIMCELLKQYIKVKIGKDIEEIYICFRLLKRFAAKSQFFLQVYNGVFPYLQEAVDDNYGGSLSITR 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00017 1117 Gene3D - 616 740 IPR036775 GO:0003684|GO:0006281
Trre9g00017 1117 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g00017 1117 FunFam DNA repair protein REV1 397 451 - -
Trre9g00017 1117 ProSiteProfiles UmuC domain profile. 380 561 IPR001126 GO:0006281
Trre9g00017 1117 MobiDBLite consensus disorder prediction 219 234 - -
Trre9g00017 1117 Pfam impB/mucB/samB family 383 529 IPR001126 GO:0006281
Trre9g00017 1117 MobiDBLite consensus disorder prediction 282 309 - -
Trre9g00017 1117 Pfam impB/mucB/samB family C-terminal domain 618 740 IPR017961 GO:0003684|GO:0006281
Trre9g00017 1117 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 616 729 IPR036775 GO:0003684|GO:0006281
Trre9g00017 1117 Hamap DNA polymerase IV [dinB]. 377 744 IPR022880 GO:0003887
Trre9g00017 1117 Gene3D - 397 451 - -
Trre9g00017 1117 Gene3D - 380 542 IPR043128 -
Trre9g00017 1117 PIRSF REV1 6 1111 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Trre9g00017 1117 SMART BRCT_7 80 159 IPR001357 -
Trre9g00017 1117 SUPERFAMILY DNA/RNA polymerases 375 611 IPR043502 -
Trre9g00017 1117 Gene3D - 329 359 - -
Trre9g00017 1117 MobiDBLite consensus disorder prediction 751 774 - -
Trre9g00017 1117 ProSiteProfiles BRCT domain profile. 78 169 IPR001357 -
Trre9g00017 1117 PANTHER DNA REPAIR PROTEIN REV1 6 1113 - -
Trre9g00017 1117 MobiDBLite consensus disorder prediction 207 325 - -
Trre9g00017 1117 FunFam DNA repair protein REV1 75 170 - -
Trre9g00017 1117 MobiDBLite consensus disorder prediction 259 281 - -
Trre9g00017 1117 FunFam DNA repair protein REV1 617 738 - -
Trre9g00017 1117 FunFam DNA repair protein REV1 438 540 - -
Trre9g00017 1117 Pfam BRCT domain, a BRCA1 C-terminus domain 80 167 IPR001357 -
Trre9g00017 1117 SUPERFAMILY BRCT domain 78 169 IPR036420 -
Trre9g00017 1117 CDD PolY_Rev1 331 731 - -
Trre9g00017 1117 Gene3D BRCT domain 72 169 IPR036420 -
Trre9g00017 1117 MobiDBLite consensus disorder prediction 237 254 - -
Trre9g00017 1117 Gene3D - 552 606 - -
Trre9g00017 1117 CDD BRCT_Rev1 82 169 - -
Trre9g00017 1117 MobiDBLite consensus disorder prediction 760 774 - -
Trre9g00017 1117 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00017 Trre-Chr9 307469 318908 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00017 K03515 - gmx:100778409 1585.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00017 9 307469 318908 Trre9g00017 9 307469 318908 ECH