Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00015 ATGTCTGTCCGACTGATCCTCCGACTGTCATGGAGTCGTTGTCGTCGTCAGTACTGTAACTTTTCATCACCGGAAGATTCCTCCAAATGGCTTACACTGCCACCTGTCAGTACTACTACTACCACTACCGTCGTCTCTAACCAACAACTCACCTCTTCCAGTTCCACTACTGCCCTCAAATGGATTATTCGCTGCTGCCCACAACTACCCAAAACCCTTATACACAAGCTCTTTCGTCTTAAACAAGTTCGAATGCTCCCTCCTCCTCCTCCTCAACAAGATCATCATCATAAATTCAAAAAGGTGACTCCTAAGGATACTTTGAACTCCGGAGATCGTATATTTCTTCCTCATTCTGTTAAACAAATTATGCCTCAATTATTAGCCCCCAAACACGACTCTCCTCCTCCTCCTCCTCCTCTCACTCTCACTGCCAAACAGATCAACTTTATCCGCGCTCTTGTTATCTATAAGGATCCTCACATTCTTGTCCTCAACAAACCTCCTGGCATGCCAGTACAGGGTGGCATTAATATCAAAACGAGTTTAGATGCTGTTGCTGCAGAATGTTTAAATTATGATTACCCTCAACATCCTCGTCTGGTGCATAGACTAGACAGAGACTCTTCTGGAATTCTCGTCATGGGAAGAACAAAGACAAGTACTACACTTCTGCATTCCATCTTCCGAGACAAAACTTCCACTGCTTCTGATGATATTGGCACCAAAAAGAGAATCCTACAAAGAAGGTATTGGGCACTGGTCCTCGGATGTCCTAGACGCTCAGGGGGGTTCGTTACTGCTCCACTGGGTAAGGTGGTGGTTGACAACGGAAAATCTGATCGAATTACTATTGTTGACAATCCTACATCACTGTCATCGCAACATGCAATTACAGAGTACCGAGTGATTGGATCATCATCTCATGGCTACACATGGTTGGAGCTTTCCCCCTTAACCGGTAGAAAACACCAGCTCCGAGTCCACTGTGCTGAGGTGTTAGGTACACCAATAGTTGGGGACTACAAGTATGGACGGCAAGCTCATAAGAAGTGGGGACAGTTTGATTTGTCTAATCTGGAGGACTCAACTGAAGAACATCTCAAGGAAGAGGCACTCCCTTTTGGTCTTAACTTGAACAAGGGAAGTATCTCTGACAAGCATCCTCGTTTACATCTTCATTGCAAGCAAATAGTGTTACCCAATATATCTCAAGCACTGCAAAATGTGCAATCACCATCAGCTTCAAGTTATGACCTTTCAGCAGTTGAAGCACTTGAATTGGAAGCGGATTTGCCTCCATTCATGAAAATGAGTTGGGATGTAACGAATTCTTGA 1338 0.4447 MSVRLILRLSWSRCRRQYCNFSSPEDSSKWLTLPPVSTTTTTTVVSNQQLTSSSSTTALKWIIRCCPQLPKTLIHKLFRLKQVRMLPPPPPQQDHHHKFKKVTPKDTLNSGDRIFLPHSVKQIMPQLLAPKHDSPPPPPPLTLTAKQINFIRALVIYKDPHILVLNKPPGMPVQGGINIKTSLDAVAAECLNYDYPQHPRLVHRLDRDSSGILVMGRTKTSTTLLHSIFRDKTSTASDDIGTKKRILQRRYWALVLGCPRRSGGFVTAPLGKVVVDNGKSDRITIVDNPTSLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDLSNLEDSTEEHLKEEALPFGLNLNKGSISDKHPRLHLHCKQIVLPNISQALQNVQSPSASSYDLSAVEALELEADLPPFMKMSWDVTNS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00015 445 CDD PseudoU_synth_RluA_like 162 354 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre9g00015 445 SUPERFAMILY Pseudouridine synthase 151 402 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre9g00015 445 Gene3D Pseudouridine synthase 145 414 - -
Trre9g00015 445 Pfam RNA pseudouridylate synthase 161 331 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre9g00015 445 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 50 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00015 Trre-Chr9 298001 301311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00015 - - gmx:100779473 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00015 9 298001 301311 Trre9g00015 9 298001 301311 ECH